View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_4 (Length: 445)
Name: NF13725_low_4
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 260238 - 260661
Alignment:
| Q |
10 |
attattctctaaagtgtaaccagtccgtgaatgtcattcttcctcataaagccttatctccttacttcaatgctctagtcctttcttcaatgtatttgaa |
109 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260238 |
attaatctctaaagtgtaaccagtctgtgaatgtcattcttcctcataaagccttatctccttacttcaatgctctagtcctttcttcaatgtatttgaa |
260337 |
T |
|
| Q |
110 |
tatatgttacagcccatttaaatgaacaaaatgaaaactcaaatccactcatcaactttcaacccatcttacactatgaaagaagcataagttgctcttg |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
260338 |
tatatgttgcagcccatttaaatgaacaaaatgaaaactcaaatccactcatcaactttcaacccatcttacactacgaaagaagcataagttgctcttg |
260437 |
T |
|
| Q |
210 |
aacatnnnnnnngaactttagacaattctctaagttttctatcaaatcaaagattacctcaatggaatgaaagagctgttaaaacaagacagcgacatca |
309 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260438 |
aacataaaaaaagaactttagacaattctctaagttttctatcaaatcaaagattacctcaatggaatgaaagagctgttaaaacaagacagcgacatca |
260537 |
T |
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| Q |
310 |
tctaataccgaaataacacagataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgtt-aggatcacatcaattta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
260538 |
tctaataccgaaataacacagataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgttaaggatcacatcaattta |
260637 |
T |
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| Q |
409 |
gcataaatttgagaggttagaact |
432 |
Q |
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|||||||||||||||||||||||| |
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| T |
260638 |
gcataaatttgagaggttagaact |
260661 |
T |
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