View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_5 (Length: 436)
Name: NF13725_low_5
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 23969392 - 23968986
Alignment:
| Q |
17 |
acatcggttatctgcaaatcctttaagtttaaagatgcctttgataaggctttcaaattggcagatattgaccctcaaagaacaataagaacacatattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23969392 |
acatcggttatctgcaaatcctttaagtttaaagatgcatttgataaggctttcaaattggcagatattgaccctcaaagaacaataagaacacatattt |
23969293 |
T |
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| Q |
117 |
cccttattaatagattaacctcttgaagatcttgttaatagattatctctttccaattaaattacacacttttcttcgcaatcttccttctataactttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23969292 |
cccttattaatagattaacctcttgaagatcttgttaatagattatctctttccaattaaattacacacttttcttcgccatcttccttctataactttt |
23969193 |
T |
|
| Q |
217 |
acatttaatgactaatctattatagtttaaactccaaaaggatagggcatgatgctataaaccttagttatcaattagcaaacaggttatgcacgagaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
23969192 |
acatttaatgactaatctattatagtttaaactccaaaaggatagggcatgatgctttaaaccttagtt----attagcaaacaggttatgcacgagaac |
23969097 |
T |
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| Q |
317 |
actatcaatgttatcattgttcttgttctttgatg-acagaatccacaacttacctaaacgttttggcctccatacagttgctgtaagtggtccctattg |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23969096 |
actatcaatgttatcattgttcttgttctttgatgaacagaatccacaacttacctaaacgttttggcctccatacagttgcggtaagtggtccctattg |
23968997 |
T |
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| Q |
416 |
gttactgatga |
426 |
Q |
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||||||||||| |
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| T |
23968996 |
gttactgatga |
23968986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 24019244 - 24019347
Alignment:
| Q |
48 |
aagatgcctttgataaggctttcaaattggcagatattgaccctcaaagaacaataaga--acacatatttcccttattaatagattaacctcttgaaga |
145 |
Q |
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||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||| ||||| || |||||||||| |||||||||||||||| ||||||| |
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| T |
24019244 |
aagatgcatttgaaaaggcattcaagttggctgacattgaccctcaaagaacagtaagagtgcatatatttccctcattaatagattaaccttttgaaga |
24019343 |
T |
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| Q |
146 |
tctt |
149 |
Q |
| |
|
|||| |
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|
| T |
24019344 |
tctt |
24019347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 24019643 - 24019699
Alignment:
| Q |
370 |
ctaaacgttttggcctccatacagttgctgtaagtggtccctattggttactgatga |
426 |
Q |
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|||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
24019643 |
ctaatcgtttgggcctccatacagttgcggtaagtggtccctaacggttactgatga |
24019699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 24019451 - 24019513
Alignment:
| Q |
252 |
aaaaggatagggcatgatgctataaaccttagttatcaattagcaaacaggttatgcacgagaac |
316 |
Q |
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|||| |||||| |||||||||| |||||||||||| |||| ||| |||||||||||||||||| |
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| T |
24019451 |
aaaaagataggacatgatgcta--aaccttagttattaattgacaagcaggttatgcacgagaac |
24019513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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