View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_6 (Length: 424)
Name: NF13725_low_6
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 214 - 415
Target Start/End: Complemental strand, 32192634 - 32192423
Alignment:
| Q |
214 |
tgcatttaccaaaatcttgtttctcttgactcttccatggataccgtaataaactaaaaatgggagaaactaccattagggatcttaaaatgtaccctaa |
313 |
Q |
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| T |
32192634 |
tgcatttaccaaaatcttgtttctcttgactcttccatggataccgtaataaactaaaaatgggagaaactaccattagggatcttaaaatgtaccctaa |
32192535 |
T |
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| Q |
314 |
atgctactttctcatc----------tcatgataataaaatgcgaataagggtgtgtatatgaaatgatgatggtcaatttattattgttaagactgctg |
403 |
Q |
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| T |
32192534 |
atgctactttctcatctcatctcatctcatgataataaaatgcgaataagggtgtgtataagaaatgatgatggtcaatttattattgttaagactgcta |
32192435 |
T |
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| Q |
404 |
ggtgttatctct |
415 |
Q |
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| T |
32192434 |
ggtgttatctct |
32192423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 32192820 - 32192738
Alignment:
| Q |
26 |
tggtgaagattgattctaattgggtggtatgacaccataaatatgatttaaatctagttattttgtttgtcaaattattaattg |
109 |
Q |
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| T |
32192820 |
tggtgaagattgattctaattgggtggtatgacaccataaatatga-ttaaatctagttattttgtttgtcaaattattaattg |
32192738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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