View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_7 (Length: 380)
Name: NF13725_low_7
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 151 - 376
Target Start/End: Complemental strand, 7022511 - 7022286
Alignment:
| Q |
151 |
tatataagagggatgtagcctttatgaacaacagagatatcatttgctttaaattaaacaataaactcaatagaggtatcagcttcttttgttggtatat |
250 |
Q |
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| T |
7022511 |
tatataagagggatgtagcctttatgaacaacagagatatcatttgctttaaattaaacaataaactcaatagaggtatcagcttcttttgttggtatat |
7022412 |
T |
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| Q |
251 |
aaagaagtataagttgtctcctgagcttaactcaattgatagagaaaatatatagtgatcagagttcaaattataaacaactcacttttccatatttaaa |
350 |
Q |
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| T |
7022411 |
aaacaagtataagttgtctcctgagcttaactcaattgatagagaaaatatatagagatcagagttcgaattataaacagctcactttttcacatttaaa |
7022312 |
T |
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| Q |
351 |
atgtgagtttcgaccactagaataat |
376 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
7022311 |
atgttagtttcgaccactagaataat |
7022286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7022657 - 7022589
Alignment:
| Q |
1 |
tataaaagttatgttttcatagtagtatttactgcaggttgcaaaaacaatatcaataggagtacgtct |
69 |
Q |
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| T |
7022657 |
tataaaagttatgttttcatagtagtatttacagcaggttgcaaaaacaatatcaataggagtacgtct |
7022589 |
T |
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