View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13725_low_8 (Length: 364)
Name: NF13725_low_8
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 339
Target Start/End: Complemental strand, 28183460 - 28183252
Alignment:
| Q |
137 |
aaacctgcacgataacaagaacaggtaatttcagtcaggtttataacttaaaaaagatttgagttattatgtttgcgtagaagatgctttcagatgattg |
236 |
Q |
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| T |
28183460 |
aaacctgcacgataacaagaacaggtaatttcagtcaggtttatttcttcaaaaagatttgaataattgtttttgtttagaagatgctttcagatgattg |
28183361 |
T |
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| Q |
237 |
catggaaagatgaaaataag------tnnnnnnnngtgcccaaaggtttagaattttggtttttcatttcttactgcagtgtgtaaaggaggaacacctt |
330 |
Q |
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| T |
28183360 |
catgtaaagaagaaaataagaaagaaaaaaaaaaagtgcccaaaggtttagaattttggtttttcatttcttactgcagcgtgtaaagaaggaacaccat |
28183261 |
T |
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| Q |
331 |
taagcatcc |
339 |
Q |
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|||| |||| |
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| T |
28183260 |
taagtatcc |
28183252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28183554 - 28183457
Alignment:
| Q |
1 |
aaaccaactactctccaagtcgtctcggcttgaaacaccctaagtgaaatcaacattataacttgaacaactctgcgagtccgggaaacatcggaaac |
98 |
Q |
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| T |
28183554 |
aaaccaattactctccaagtcgtctcggcttgaaacaccctaagtgagatcaacattataacttgaacaactctgcgagtctgagaaacatcggaaac |
28183457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 113 - 328
Target Start/End: Original strand, 29527144 - 29527361
Alignment:
| Q |
113 |
gagaaacttcaggaatctcaccccaaacctgcacgataacaagaacaggtaatttcagtcaggtttataacttaaaaaagatttgagttattatgtttgc |
212 |
Q |
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| T |
29527144 |
gagaaacttcaggaaccacatccgaaatctgcacgataacaagaactcataatttcagtcagatttatagcttaaaaaagtttgaagcaattgtgtttgt |
29527243 |
T |
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| Q |
213 |
gtagaagatgctttcagatgattgcatggaaagatgaaaataa--gtnnnnnnnngtgcccaaaggtttagaattttggtttttcatttcttactgcagt |
310 |
Q |
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||| |||||| ||||||||||||||||||||||| |||||||| | | ||||| ||| |||| |||||||||||||| |||||||||||| |
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| T |
29527244 |
gtaaaagatgttttcagatgattgcatggaaagaagaaaataactggaaaaaagagagcccagagggttaggtttttggtttttcatgtcttactgcagt |
29527343 |
T |
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| Q |
311 |
gtgtaaaggaggaacacc |
328 |
Q |
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||||||||||||| |||| |
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| T |
29527344 |
gtgtaaaggaggagcacc |
29527361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 29529204 - 29529311
Alignment:
| Q |
141 |
ctgcacgataacaagaacaggtaatttcagtcaggttta----taacttaaaaaagatttgagttattatgtttgcgtagaagatgctttcagatgattg |
236 |
Q |
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||||||| ||| |||||| |||||||||||||||||||| ||| |||||||| |||| ||| ||| || ||| ||||||||||| |||||||||||| |
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| T |
29529204 |
ctgcacggtaataagaacgggtaatttcagtcaggtttaattataatttaaaaaatatttaagtaattgtgcttgtgtagaagatgcgttcagatgattg |
29529303 |
T |
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| Q |
237 |
catggaaa |
244 |
Q |
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|||||||| |
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| T |
29529304 |
catggaaa |
29529311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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