View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13725_low_9 (Length: 362)
Name: NF13725_low_9
Description: NF13725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13725_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 17075410 - 17075755
Alignment:
| Q |
11 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatgga |
110 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||||||||||||| ||| |
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| T |
17075410 |
cgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcggaagaaagtgaacgga |
17075509 |
T |
|
| Q |
111 |
attttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaat |
210 |
Q |
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|||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| ||||||||||||| |||||||| |
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| T |
17075510 |
attttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatctaaattgagaaaat |
17075609 |
T |
|
| Q |
211 |
tacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaa |
310 |
Q |
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|
||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||||||||||||||||| |
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| T |
17075610 |
tacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaacaatgattgggttaa |
17075709 |
T |
|
| Q |
311 |
ttgggtggcagtgcatgggaatgagaaggttgtaattgatgatgtc |
356 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
17075710 |
ttgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11053474 - 11053702
Alignment:
| Q |
1 |
atcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagaggaaga |
99 |
Q |
| |
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||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || |||||| |
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| T |
11053474 |
atcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcggaaga |
11053572 |
T |
|
| Q |
100 |
aagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaa |
199 |
Q |
| |
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|||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||||||| |
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| T |
11053573 |
aagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatctaa |
11053672 |
T |
|
| Q |
200 |
atcgagaaaattacaaggttcggatcgtct |
229 |
Q |
| |
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|||||| |||||||||||||| || ||||| |
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| T |
11053673 |
atcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 355
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
225 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
324 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
325 |
atgggaatgagaaggttgtaattgatgatgt |
355 |
Q |
| |
|
||| ||||||||| || || |||||||||| |
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| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 94 - 337
Target Start/End: Complemental strand, 17684166 - 17683923
Alignment:
| Q |
94 |
ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaa |
193 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||||| |
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| T |
17684166 |
ggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaa |
17684067 |
T |
|
| Q |
194 |
atctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggtt |
293 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||||| |
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|
| T |
17684066 |
atctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggtt |
17683967 |
T |
|
| Q |
294 |
aacaatgattgggttaattgggtggcagtgcatgggaatgagaa |
337 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17683966 |
aataatgattgggttaattgggtggcagtgcatgggaatgagaa |
17683923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
177 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
276 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
277 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
340 |
Q |
| |
|
| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17684259 - 17684198
Alignment:
| Q |
1 |
atcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggcct |
62 |
Q |
| |
|
||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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|
| T |
17684259 |
atcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcct |
17684198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 353
Target Start/End: Original strand, 10559739 - 10560002
Alignment:
| Q |
90 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
189 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
190 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
290 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtaattgatgat |
353 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10558424 - 10558490
Alignment:
| Q |
1 |
atcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
67 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
10558424 |
atcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 26741878 - 26741535
Alignment:
| Q |
12 |
gctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatggaa |
111 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||||||||||||||| | |
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|
| T |
26741878 |
gctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcggaagaaagtgaatgaga |
26741779 |
T |
|
| Q |
112 |
ttttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaatt |
211 |
Q |
| |
|
| || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
26741778 |
tcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatctaagtcgagaaaatt |
26741679 |
T |
|
| Q |
212 |
acaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaat |
311 |
Q |
| |
|
|||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||||| |||||||||||| |
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| T |
26741678 |
acaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaacaacgattgggttaat |
26741579 |
T |
|
| Q |
312 |
tgggtggcagtgcatgggaatgagaaggttgtaattgatgatgt |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26741578 |
tgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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