View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13726_high_2 (Length: 404)
Name: NF13726_high_2
Description: NF13726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13726_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 39803532 - 39803908
Alignment:
| Q |
1 |
tgtttgttactattatatgcacatcttgtgataagatgatagttgtttaatttcatttcatttcattttggcttctaaaagnnnnnnnntatcggtacac |
100 |
Q |
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| T |
39803532 |
tgtttgttactattatatgcacatcttgtgataagatgatagttgtttaatttcatttcatttcattttggcttctaaaagaaaaaaaatatcggtacac |
39803631 |
T |
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| Q |
101 |
gtcaaatttccgaatttacagcaaaaattatctcatttagtaaggttacgaattcatttttaaagcaagcaggaaaatgctgcaatggaatggaagtcat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39803632 |
gtcaaatttccgaatttacagtaaaaattatctcatttagtaaggttacgaattcatttttaaagcaagcaggaaaatgctgcaatggaatggaagtcat |
39803731 |
T |
|
| Q |
201 |
ataaagcacaaagcatccaatgctgaaatagtaaaagttttcaatcataagactttgtctgtccttgatcgaatgtttctcaccaacagtgcacaacata |
300 |
Q |
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| T |
39803732 |
ataaaccacaaagcatccaatgctgaaatagtaaaagttttcaatcataagactttgtctgtccttgatcgaatgtttctcaccaacagtgcacaacata |
39803831 |
T |
|
| Q |
301 |
tatggtcagcaagatcctaaaattctacaggtctgacaagtgtctcctaaaaaagaccatgttctcactatcttttt |
377 |
Q |
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| T |
39803832 |
tatggtcaccaagatcctaaagttctacatgtctgacaagtgtctcctaaaaaaaaccatgttctcactatcttttt |
39803908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 91 - 270
Target Start/End: Original strand, 39812345 - 39812529
Alignment:
| Q |
91 |
atcggtacacgtcaaatttccgaatttacagcaaaaattatctcatttagta---aggttacgaattcatttttaaagcaagcaggaaaatgctgcaatg |
187 |
Q |
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| T |
39812345 |
atcggtacacgtcaaattgccgaatgtactgtaaaaattctctcatttagtactaagtttaccaattcatttttaaagcaagaaggaaaatgctgcaatg |
39812444 |
T |
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| Q |
188 |
gaatggaagtcatataaagcacaaagcatccaatgctgaaatagtaaaagttt--tcaatcataagactttgtctgtccttgatc |
270 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
39812445 |
gattggaagtcatataaagcacaaaacatccaatgctgaaatagtaaatgttttctcaatcataagactttgtctgtccttgatc |
39812529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 39812526 - 39812617
Alignment:
| Q |
313 |
gatcctaaaattctacaggtctgacaagtgtctcctaaaaaagaccatgttctcactatctttttattataaataaactctcgttgttcttc |
404 |
Q |
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| T |
39812526 |
gatcctaaaattctacatgtctgacatgtgtctcctaaaaaaaaccatgttctcactatctttttattataaatagactctccttgttcttc |
39812617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 39908384 - 39908435
Alignment:
| Q |
227 |
aatagtaaaagttttcaatcataagactttgtctgtccttgatcgaatgttt |
278 |
Q |
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| T |
39908384 |
aatagtagaagttttcaatcataagactttgtctgtccttgatagaatgttt |
39908435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 39919872 - 39919984
Alignment:
| Q |
235 |
aagttttcaatcataagactttgtctgtccttgatcgaatgtttctcaccaacagtgcacaacatatatggtcagcaagat-cctaaaattctacaggtc |
333 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||| || |||| | ||||||| | ||||||| |||||| |||||| ||||||| || |
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| T |
39919872 |
aagttttcaatcataagactttgtatgtccttgataaaatgtttgtctccaaaatagcacaac--aaatggtcaacaagatccctaaatttctacatgta |
39919969 |
T |
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| Q |
334 |
tgacaagtgtctcct |
348 |
Q |
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| T |
39919970 |
tgacatgtgtctcct |
39919984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 39824092 - 39824130
Alignment:
| Q |
366 |
cactatctttttattataaataaactctcgttgttcttc |
404 |
Q |
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| T |
39824092 |
cactatctttttattataaataaactctctttgttcttc |
39824130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 39908522 - 39908560
Alignment:
| Q |
366 |
cactatctttttattataaataaactctcgttgttcttc |
404 |
Q |
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| T |
39908522 |
cactatctttttattataaatagactctctttgttcttc |
39908560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39812283 - 39812315
Alignment:
| Q |
1 |
tgtttgttactattatatgcacatcttgtgata |
33 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
39812283 |
tgtttgctactattatatgcacatcttgtgata |
39812315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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