View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13726_low_1 (Length: 460)

Name: NF13726_low_1
Description: NF13726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13726_low_1
NF13726_low_1
[»] chr7 (9 HSPs)
chr7 (62-440)||(41620200-41620580)
chr7 (128-285)||(41615741-41615897)
chr7 (338-426)||(41615628-41615716)
chr7 (128-248)||(15999347-15999465)
chr7 (81-132)||(41615926-41615977)
chr7 (317-378)||(6239849-6239910)
chr7 (150-213)||(6240011-6240074)
chr7 (319-398)||(32402402-32402481)
chr7 (128-248)||(14585477-14585595)
[»] chr2 (5 HSPs)
chr2 (149-399)||(26312700-26312952)
chr2 (149-248)||(38716537-38716636)
chr2 (227-374)||(34121640-34121788)
chr2 (317-409)||(38716069-38716161)
chr2 (238-375)||(42294941-42295079)
[»] chr8 (3 HSPs)
chr8 (158-397)||(27423115-27423354)
chr8 (314-425)||(24103592-24103703)
chr8 (294-372)||(8120617-8120694)
[»] chr6 (2 HSPs)
chr6 (150-424)||(29178786-29179061)
chr6 (295-401)||(25436948-25437052)
[»] chr1 (6 HSPs)
chr1 (294-401)||(16799192-16799297)
chr1 (294-377)||(39311999-39312082)
chr1 (150-244)||(35880870-35880964)
chr1 (153-211)||(16799058-16799116)
chr1 (150-220)||(25291915-25291985)
chr1 (326-398)||(25291744-25291816)
[»] chr5 (3 HSPs)
chr5 (150-218)||(9779666-9779734)
chr5 (325-398)||(624379-624451)
chr5 (83-132)||(9779784-9779833)
[»] chr4 (5 HSPs)
chr4 (293-379)||(27258408-27258494)
chr4 (294-374)||(44343846-44343926)
chr4 (293-379)||(21201268-21201354)
chr4 (317-378)||(35945604-35945665)
chr4 (330-398)||(40087963-40088029)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 62 - 440
Target Start/End: Complemental strand, 41620580 - 41620200
Alignment:
Q  62 aacaaaataccaggcacggattgatacttagaaaatagttgattattttcaatacatatcgagtgcaagtaaagtatcaattcaacgaaggattgaagtg 161  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  41620580 aacaaaataccaggcaccgattgatacttagaaaatagttgattattttcaatacacatcgagtgcaagtaaagtatcaatttaacga-ggattgaagtg 41620482  T
Q  162 gataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaagatactaacataa 261  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  41620481 gataagtttcaagtatttttaaatattaagtttagttatttatgatccaaaatgacaaacaacagagataaaattttaagattctaagatactaacataa 41620382  T
Q  262 aatgcagaagtaaataaagcatat-nnnnnnntttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgattt 360  Q
    |||||| |||||||||||||||||        ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  41620381 aatgcataagtaaataaagcatataaaaagaatttagagattcaagtaaaaacgtttagttaacgaattaacttggtaaaaataaaggtttgcatgattt 41620282  T
Q  361 agaaagttacaactctgagtcatgaaagttatagcttcatatatcgatagaatgatgtagaga--gcttcacatcgatttgt 440  Q
    ||||| |||||||||| ||| || |||||||||||||| |||||||||||||| |||||||||  ||||||||| |||||||    
T  41620281 agaaaattacaactctaagttataaaagttatagcttcgtatatcgatagaataatgtagagatcgcttcacattgatttgt 41620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 285
Target Start/End: Complemental strand, 41615897 - 41615741
Alignment:
Q  128 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 227  Q
    |||||||||||| || ||| || ||||||| |||||| |||| |||||||||  ||||| ||| ||||||||||||  |||||||||||||||||| |||    
T  41615897 aagtaaagtatcgatccaatga-ggattgatgtggattagttttaagtatttccaaataccaagtttagttatttaacatccaaaatgacaaacaacaca 41615799  T
Q  228 gataaaattttaagattctaagatactaacataaaatgcagaagtaaataaagcatat 285  Q
     ||| |||||||||||||| ||||||||| ||| |||||| ||||||| |||||||||    
T  41615798 aatacaattttaagattcttagatactaaaatagaatgcacaagtaaacaaagcatat 41615741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 41615716 - 41615628
Alignment:
Q  338 aaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttcatatatcgatagaatgatgtagagagct 426  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || ||||||  ||||||||||||||||    
T  41615716 aaaaatataggtttgcaagatttagaaagttacaactctgaattatggaagttatagcttcgtacatcgatgaaatgatgtagagagct 41615628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 15999347 - 15999465
Alignment:
Q  128 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 227  Q
    ||||||||||||||| | ||||||| | ||| |||||||||| |||||||||| ||||   || |||||||||||| |||||||| | | |||| ||| |    
T  15999347 aagtaaagtatcaatcccacgaaggttggaa-tggataagttataagtattttcaaatgctaagtttagttatttaagatccaaagtcaaaaac-ataaa 15999444  T
Q  228 gataaaattttaagattctaa 248  Q
    ||||| |||||||||| ||||    
T  15999445 gataagattttaagatgctaa 15999465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 41615977 - 41615926
Alignment:
Q  81 attgatacttagaaaatagttgattattttcaatacatatcgagtgcaagta 132  Q
    |||||| ||||||||||||||||||||||| ||| |||||| ||||||||||    
T  41615977 attgatgcttagaaaatagttgattattttgaatgcatatctagtgcaagta 41615926  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 6239910 - 6239849
Alignment:
Q  317 tggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctga 378  Q
    ||||||| ||||| |||||||||| |||  |||||||||||||||||||  |||||||||||    
T  6239910 tggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctga 6239849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 6240074 - 6240011
Alignment:
Q  150 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaa 213  Q
    |||||||  |||||||||||||||||||||||||||   || |||| ||||||| |||||||||    
T  6240074 aggattgtcgtggataagttctaagtatttttaaatgctaagtttaattatttaagatccaaaa 6240011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 32402481 - 32402402
Alignment:
Q  319 gttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttc 398  Q
    ||||| ||||||||| |||||| ||  || ||| || ||||||||||| ||||||| ||||| ||||||| |||||||||    
T  32402481 gttaaggaattaactcggtaaagatggagcttttcaagatttagaaagctacaactttgagttatgaaagctatagcttc 32402402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 14585477 - 14585595
Alignment:
Q  128 aagtaaagtatcaattcaacgaaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaataca 227  Q
    |||||||||||| || | || |||| ||| |||||||||||| |||||||||| ||||   || | |||||||||| |||||||| | | |||| ||| |    
T  14585477 aagtaaagtatcgatcccacaaagg-ttggagtggataagttataagtattttcaaatgctaagtatagttatttaagatccaaagtcaaaaac-ataaa 14585574  T
Q  228 gataaaattttaagattctaa 248  Q
    ||||| |||||||||| ||||    
T  14585575 gataagattttaagatgctaa 14585595  T

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Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 149 - 399
Target Start/End: Complemental strand, 26312952 - 26312700
Alignment:
Q  149 aaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaa 248  Q
    ||||||||||||  |||||||| |||||||| |||||   || |||||||||||| |||||||||| ||||| || | |||||| |||||||||||||||    
T  26312952 aaggattgaagttaataagttccaagtatttataaatgctaagtttagttatttaagatccaaaataacaaataacaaagataagattttaagattctaa 26312853  T
Q  249 gatactaacataaaatgcagaagtaaataaagcatat-nnnnnnntttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaag 347  Q
    || | |||  ||||||||| ||||||||||| ||| |        ||||||||||||||| ||||  | ||||||| ||||||||||| |||| ||| ||    
T  26312852 gacattaaagtaaaatgcacaagtaaataaaacatgtaaaaaagatttagagattcaattgaaaagatgtggttaaagaattaacttgctaaagatagag 26312753  T
Q  348 gtttgcatgatttagaaagttacaac-tctgagtcatgaaagttatagcttca 399  Q
    ||||||| ||||||||||| || ||| | ||||| ||| ||||||||||||||    
T  26312752 gtttgcacgatttagaaagctataacttttgagttatggaagttatagcttca 26312700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 38716636 - 38716537
Alignment:
Q  149 aaggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaa 248  Q
    |||||||| |||| |||| ||||||||||||||||||   |  |||||||||||| |||||||||||||||| || | |||||| |||||| ||||||||    
T  38716636 aaggattggagtgaataaattctaagtatttttaaatgctacgtttagttatttaagatccaaaatgacaaataacaaagataagattttaggattctaa 38716537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 374
Target Start/End: Original strand, 34121640 - 34121788
Alignment:
Q  227 agataaaattttaagattctaagatactaacataaaatgcagaagtaaataaagca--tatnnnnnnntttagagattcaattaaaaacgtttggttaat 324  Q
    |||||| ||||||||||||||||| |||||  ||||||||| ||||||||||||||  ||        ||||| ||||||| | |||| || |||||||     
T  34121640 agataatattttaagattctaagacactaaagtaaaatgcaaaagtaaataaagcatgtagaaacaaatttagcgattcaagtgaaaa-gtgtggttaaa 34121738  T
Q  325 gaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaact 374  Q
    ||| |||||||||||||||| ||||||  | |||||||| || |||||||    
T  34121739 gaactaacttggtaaaaatagaggtttataagatttagacagctacaact 34121788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 38716161 - 38716069
Alignment:
Q  317 tggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttcatatatcgata 409  Q
    |||||||||||||||||| ||||| ||| |||||| || |||||| |||| |||||||| |||| ||| ||| ||||  |||||| |||||||    
T  38716161 tggttaatgaattaacttagtaaacatagaggtttacaagatttataaagctacaactcggagttatggaagctataaattcatacatcgata 38716069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 42294941 - 42295079
Alignment:
Q  238 taagattctaagatactaacataaaatgcagaagtaaataaagcatatnnnnnnn-tttagagattcaattaaaaacgtttggttaatgaattaacttgg 336  Q
    ||||||| |||| | ||||  ||||||||||||||||||||||||| |        ||||||||||||  | |||| || | ||||| ||||||||||||    
T  42294941 taagattttaaggttctaaagtaaaatgcagaagtaaataaagcatgtcaaaagaatttagagattcatgtgaaaaagtattgttaaggaattaacttgg 42295040  T
Q  337 taaaaataaaggtttgcatgatttagaaagttacaactc 375  Q
    |||||||| || |||| | |||||| |||| ||||||||    
T  42295041 taaaaatagagatttgtaagatttataaagctacaactc 42295079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 158 - 397
Target Start/End: Original strand, 27423115 - 27423354
Alignment:
Q  158 agtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaagatactaac 257  Q
    ||||||||| |||||| |||||| |||| | ||||||||||||| | |||||||| ||| ||  | || |||||   |||||||||||||||| |||||     
T  27423115 agtggataaattctaaatattttcaaatct-aaatttagttattcaagatccaaagtgataattagtaaagatagtgttttaagattctaagacactaaa 27423213  T
Q  258 ataaaatgcagaagtaaataaagcatat-nnnnnnntttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatg 356  Q
     |||||| ||||||||||||||||||||        ||||||||||||| | |||| || |||||||  ||||||||| ||||||||||| ||||| | |    
T  27423214 gtaaaattcagaagtaaataaagcatataaaaaagatttagagattcaagtgaaaaagtgtggttaagaaattaacttagtaaaaataaatgtttgtaag 27423313  T
Q  357 atttagaaagttacaactctgagtcatgaaagttatagctt 397  Q
    |||||||||| |||||  |||||||||| |||  |||||||    
T  27423314 atttagaaagctacaatcctgagtcatggaagcaatagctt 27423354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 24103592 - 24103703
Alignment:
Q  314 gtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttcatatatcgatagaat 413  Q
    ||||||||||  ||||||||  ||||||||| ||||||| |  |||||||||||||||||| ||||| ||| ||||||||||||  ||||| |||||||     
T  24103592 gtttggttaagaaattaactacgtaaaaatagaggtttgtaaaatttagaaagttacaactgtgagttatggaagttatagctttgtatattgatagaac 24103691  T
Q  414 gatgtagagagc 425  Q
    ||| || |||||    
T  24103692 gatttaaagagc 24103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 8120694 - 8120617
Alignment:
Q  294 ttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaa 372  Q
    |||||||||||| ||||||  | ||||||| || ||||||||||||| ||||||||||||| ||||||||||| |||||    
T  8120694 ttagagattcaagtaaaaaa-tgtggttaaggagttaacttggtaaagataaaggtttgcaagatttagaaagctacaa 8120617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 424
Target Start/End: Original strand, 29178786 - 29179061
Alignment:
Q  150 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagattctaag 249  Q
    ||||||||||||||||||||||||||||||| |||||  || ||||| || |||   |||||||||| |||||| | ||| || |||||  | |||||||    
T  29178786 aggattgaagtggataagttctaagtattttcaaatactaagtttaggtagttaatgtccaaaatgataaacaacaaagacaatatttttgggttctaag 29178885  T
Q  250 atactaacataaaatgcagaagtaaataaagcatatnnnnnnn-tttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaagg 348  Q
    | |||||   ||||||||||| |||||||| ||| |        ||||||||||||| | ||||  | |||||||  |||||| ||| |||| ||| |||    
T  29178886 acactaaaggaaaatgcagaattaaataaaacatgtaaaaaggatttagagattcaagtgaaaatatgtggttaagaaattaatttgataaagatagagg 29178985  T
Q  349 tttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttcatatatcgatagaatgatgtagagag 424  Q
    |||| | ||||||||| ||||||||||| ||| ||| |||||||||||||||| |||  ||||||| |||| ||||    
T  29178986 tttgtaagatttagaacgttacaactctaagttatggaagttatagcttcatacatcattagaatgttgtaaagag 29179061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 401
Target Start/End: Original strand, 25436948 - 25437052
Alignment:
Q  295 tagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatag 394  Q
    ||||||||||| | |||| || ||||| | |||||||||||||||| ||| || ||  || ||||||||||||||||||||| ||  ||| ||| |||||    
T  25436948 tagagattcaagtgaaaaagtgtggttgaggaattaacttggtaaagatagagattcacaagatttagaaagttacaactctaag--atggaagctatag 25437045  T
Q  395 cttcata 401  Q
    |||||||    
T  25437046 cttcata 25437052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 16799192 - 16799297
Alignment:
Q  294 ttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttata 393  Q
    |||||||||||| | ||||||| |||| || |||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||  ||| ||||||||    
T  16799192 ttagagattcaagtgaaaacgtgtggtaaaggaattaacttggtaaaaatagaggtttgcaagatttagaaagctacaacgctgag--atggaagttata 16799289  T
Q  394 gcttcata 401  Q
     |||||||    
T  16799290 acttcata 16799297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 39311999 - 39312082
Alignment:
Q  294 ttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctg 377  Q
    |||||||||||| | |||| || ||||||| ||||||||||| |||| ||| ||||||||| ||||||||||| ||||||||||    
T  39311999 ttagagattcaagtgaaaaagtgtggttaaggaattaacttgataaagatagaggtttgcaagatttagaaagctacaactctg 39312082  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 35880870 - 35880964
Alignment:
Q  150 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaacaatacagataaaattttaagatt 244  Q
    ||||||||||| || ||||||| ||||||||||||||| || ||||||||||||     |||||||||||| || | | |||| |||||||||||    
T  35880870 aggattgaagttgacaagttcttagtatttttaaatatgaagtttagttatttaaatatcaaaatgacaaataaaaaaaataagattttaagatt 35880964  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 16799058 - 16799116
Alignment:
Q  153 attgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaa 211  Q
    |||| ||||||||||||||||||||||| ||||   || |||||||||||| |||||||    
T  16799058 attgtagtggataagttctaagtattttcaaatggtaagtttagttatttaagatccaa 16799116  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 25291985 - 25291915
Alignment:
Q  150 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgacaaa 220  Q
    ||||||| |||||| |  || |||||||||| |||||  || |||||||||||| ||||||||||||||||    
T  25291985 aggattggagtggacagattttaagtattttcaaatactaagtttagttatttaagatccaaaatgacaaa 25291915  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 25291816 - 25291744
Alignment:
Q  326 aattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttc 398  Q
    |||||||||| | || ||| ||||||||| ||||||||||| |||| ||| |||| ||| || ||||||||||    
T  25291816 aattaacttgatcaagatagaggtttgcaagatttagaaagctacagctcagagttatggaaattatagcttc 25291744  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 9779734 - 9779666
Alignment:
Q  150 aggattgaagtggataagttctaagtatttttaaatatcaaatttagttatttatgatccaaaatgaca 218  Q
    |||||||| ||||||||||| |||  |||||||||||| || |||||||||||| |||||||| |||||    
T  9779734 aggattgatgtggataagttttaatcatttttaaatattaagtttagttatttaagatccaaagtgaca 9779666  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 624379 - 624451
Alignment:
Q  325 gaattaacttggtaaaaataaaggtttgcatgatttag-aaagttacaactctgagtcatgaaagttatagcttc 398  Q
    |||||||||||||||||||| ||||||||| ||||||| |||| ||||||||| ||  ||| |||||||||||||    
T  624379 gaattaacttggtaaaaatagaggtttgcaggatttagaaaagctacaactctaag--atggaagttatagcttc 624451  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 9779833 - 9779784
Alignment:
Q  83 tgatacttagaaaatagttgattattttcaatacatatcgagtgcaagta 132  Q
    |||| ||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  9779833 tgatgcttagaaaatagttgtttattttcaatgcatattgagtgtaagta 9779784  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 27258408 - 27258494
Alignment:
Q  293 tttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgag 379  Q
    ||||||||||||| | |||| || ||||||| |||||||||||  ||| ||||||||||||| |||||| |||  ||||| ||||||    
T  27258408 tttagagattcaaatgaaaaagtgtggttaaggaattaacttgacaaagataaaggtttgcaagatttaaaaaactacaattctgag 27258494  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 44343846 - 44343926
Alignment:
Q  294 ttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaact 374  Q
    ||||||||| || | |||| || ||||||| |||||||||||||||| ||| ||  ||||| ||||||||||| |||||||    
T  44343846 ttagagatttaagtgaaaaagtgtggttaaggaattaacttggtaaagatagagacttgcaagatttagaaaggtacaact 44343926  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 21201268 - 21201354
Alignment:
Q  293 tttagagattcaattaaaaacgtttggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgag 379  Q
    ||||||||||||| | |||| || ||||||| ||||||||||   ||| ||||||||||||| |||||| |||| ||| | ||||||    
T  21201268 tttagagattcaaatgaaaaagtgtggttaaggaattaacttcacaaagataaaggtttgcaagatttataaagctacgattctgag 21201354  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 35945665 - 35945604
Alignment:
Q  317 tggttaatgaattaacttggtaaaaataaaggtttgcatgatttagaaagttacaactctga 378  Q
    ||||||| ||||||| |||||||| ||| |||| |||| ||||||||||| ||||| |||||    
T  35945665 tggttaaggaattaaattggtaaatatagaggtctgcaagatttagaaagctacaaatctga 35945604  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 40087963 - 40088029
Alignment:
Q  330 aacttggtaaaaataaaggtttgcatgatttagaaagttacaactctgagtcatgaaagttatagcttc 398  Q
    ||||||||||| ||| || |||||| ||||||||||| ||||||||| ||  ||||||| |||||||||    
T  40087963 aacttggtaaagatagagatttgcaagatttagaaagctacaactctaag--atgaaagctatagcttc 40088029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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