View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13727_high_3 (Length: 530)

Name: NF13727_high_3
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13727_high_3
NF13727_high_3
[»] chr4 (1 HSPs)
chr4 (1-530)||(411007-411529)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 411007 - 411529
Alignment:
Q  1 cgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagtagtttagacgttggtcaaatttgtgagttgtgacatctatgattgatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||    
T  411007 cgaataaagaccatagccagcctccacgaaaatcagaattgaattacaagtagtttagacattggtcaaatttgt-------gacatctatgattgatgt 411099  T
Q  101 gcattgttcttctttttcttctattttatttctgtcataactgttggcaatttcatcaggtattatcagaactggctccatatgttgtactagctgagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  411100 gcattgttcttctttttcttctattttatttctgtcataactgttggcaatttcatcaggtattatcagaactggctccatatgttgtgctagctgagaa 411199  T
Q  201 gctaggaaggttagctgtgcagttggtatctggaggaagtggaatccagtctgtaaaagtggtttaccgatcagccaggggtcccgatgacctagacact 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  411200 gctaggaaggttagctgtgcagttggtatccggaggaagtggaatccagtctgtaaaagtggtttaccgatcagccaggggtcccgatgaccttgacact 411299  T
Q  301 agacttcttcgagccatgatcacaaaaggcatcattgaaccaatatcaaacacaattgtcaaccttgtaaatgctgattacattgcgaagcaaaaaggcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  411300 agacttcttcgagccatgatcacaaaaggcatcattgaaccaatatcaaacacaattgtcaaccttgtaaatgctgattacattgcgaagcaaaaaggcc 411399  T
Q  401 ttcgcataagcgaggaaagagtagtggtcgattcgtctcctgagctacctgttgagtcaatccagatacagatatccaatgtggagtccaaattcgcgag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  411400 ttcgcataagcgaggaaagagtagtggtcgattcgtctcctgaactacctgttgagtcaatccagatacagatatccaatgtggagtccaaattcgcgag 411499  T
Q  501 tgctgtatcagagactggtcagataagcat 530  Q
    ||||||||||||||||||||||||||||||    
T  411500 tgctgtatcagagactggtcagataagcat 411529  T

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