View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13727_high_4 (Length: 377)
Name: NF13727_high_4
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 48153957 - 48154285
Alignment:
| Q |
1 |
aagggactccaagccaccgatgcagataccgccgatgaaagcagccggagtgagagagtgatcggaggtggtggggacggcggggatctcgttgtcatcc |
100 |
Q |
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| T |
48153957 |
aagggactccaagccaccgatgcagataccgccgatgaaagcagcgggagtgagagagtgatcggaggtggtggggacggcggggatctcgttgtcatcc |
48154056 |
T |
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| Q |
101 |
aattggataacggtgggatgaacgccgatggtgaagaggagattcctcatgacatggcacatgcagcatgaggaggatcgggtgaagatgatgacagggt |
200 |
Q |
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| T |
48154057 |
aattggataacggtgggatgaacgccgatggtgaagaggagattcctcatgacatggcacatgcagcatgaggaggatcgggtgaagatgatgacagggt |
48154156 |
T |
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| Q |
201 |
gttctgatatgaggcggttgattcgagtttctatggattcgtctatgtccatggatagagaagatgaagagggt------gagttggacatgatggtaga |
294 |
Q |
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| T |
48154157 |
gttctgatatgaggcggttgattcgagtttctgtggattcgtctatgtccatggatagagaagatgaagagggtgagttggagttggacatgatggtaga |
48154256 |
T |
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| Q |
295 |
agcagtgaggttgaggacggttttgcagc |
323 |
Q |
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| T |
48154257 |
agcagtgaggttgaggacggttttgcagc |
48154285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 4109427 - 4109283
Alignment:
| Q |
85 |
gatctcgttgtcatccaattggataacggtgggatgaacgccgatggtgaagaggagattcctcatgacatggcacatgcagcatgaggaggatcgggtg |
184 |
Q |
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| T |
4109427 |
gatctcgttgtcgtctaattcgatgacggtgggattaacacctatggtggagagaagcttcttcatgacatgacacatgcagc---aagaggaacgtgtg |
4109331 |
T |
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| Q |
185 |
aagatgatgacagggtgttctgatatgaggcggttgattcgagtttct |
232 |
Q |
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| T |
4109330 |
aagatgataactggatgttctgatatgagacggtggatgcgtgtttct |
4109283 |
T |
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