View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13727_high_7 (Length: 306)

Name: NF13727_high_7
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13727_high_7
NF13727_high_7
[»] chr4 (1 HSPs)
chr4 (16-294)||(3099111-3099408)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 3099111 - 3099408
Alignment:
Q  16 ttttacactcacaacttgccccacattgtaatcactaatcacaccctaacccatgtgcacccctcttttttcttatcttctcctctctataaatctcatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3099111 ttttacactcacaacttgccccacattgtaatcactaatcacaccctaacccatgtgcacccctcttttttcttatcttctcctctctataaatctcatt 3099210  T
Q  116 cctcaaacccctctccctccatctc----------cataacacagaacttcttttacc---------tcaaaaacatactcaaataccataaatacccct 196  Q
    |||||||||||||||||||||||||          ||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||    
T  3099211 cctcaaacccctctccctccatctccataacacaacataacacagaactttttttacctcaaaaatatcaaaaacatactcaaataccataaatacccct 3099310  T
Q  197 ttcatctcctttattcaagtttcaatctttcacctcagaatctcttttttcttcaattctagttaatgggttgttgctaaattctcttttaatcttca 294  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3099311 ttcatctcctttattcaagtttcaatctttcacctcaaaatctcttctttcttcaattctagttaatgggttgttgctaaatcctcttttaatcttca 3099408  T

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