View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13727_low_1 (Length: 860)
Name: NF13727_low_1
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 217 - 851
Target Start/End: Original strand, 1674117 - 1674751
Alignment:
| Q |
217 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgttgatgtggcaagtttgttactg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1674117 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtgacaagtttgttactg |
1674216 |
T |
|
| Q |
317 |
attcatttcattccttgctatactatataaggccagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674217 |
attcatttcattccttgctatactatataaggctagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
1674316 |
T |
|
| Q |
417 |
ctctcatacttttctaatatggtatcacgatccttcacggtccttaaccttcaagcttctgcataagcgctttcttcaaccttgagcttcgttttgctct |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1674317 |
ctctcatacttttctaatatggtatcacgatccttcacggtccttgaccttcaagcttctgcataagcgctttcttcaaccttgagcttcgtttttctct |
1674416 |
T |
|
| Q |
517 |
tcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674417 |
tcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggat |
1674516 |
T |
|
| Q |
617 |
taacgcattctctcacaatcaagcttgatgagaagaattttctgcttttgagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgt |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674517 |
taacgcattctctcacaatcaagcttgatgagaagaactttctgctttggagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgt |
1674616 |
T |
|
| Q |
717 |
tctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtc |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674617 |
tctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtc |
1674716 |
T |
|
| Q |
817 |
ctattcacatggcttctttctacgatctctgatga |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1674717 |
ctattcacatggcttctttctacgatctctgatga |
1674751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 217 - 435
Target Start/End: Original strand, 1678694 - 1678912
Alignment:
| Q |
217 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgttgatgtggcaagtttgttactg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
1678694 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaattgtgctgatgtggcaagtttgttactg |
1678793 |
T |
|
| Q |
317 |
attcatttcattccttgctatactatataaggccagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1678794 |
attcatttcattccttgctatactatataaggctagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
1678893 |
T |
|
| Q |
417 |
ctctcatacttttctaata |
435 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1678894 |
ctctcatacttttctaata |
1678912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 217 - 851
Target Start/End: Original strand, 45493358 - 45493991
Alignment:
| Q |
217 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgttgatgtggcaagtttgttactg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45493358 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45493457 |
T |
|
| Q |
317 |
attcatttcattccttgctatactatataaggccagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
416 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493458 |
attcatttcattcct-gctatactatataaggctagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
45493556 |
T |
|
| Q |
417 |
ctctcatacttttctaatatggtatcacgatccttcacggtccttaaccttcaagcttctgcataagcgctttcttcaaccttgagcttcgttttgctct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45493557 |
ttctcatacttttctaatatggtatcacgatccttcacggtccttgaccttcaagcttctgcataagcgccttcttcaaccttgagcttcgttttgctct |
45493656 |
T |
|
| Q |
517 |
tcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493657 |
tcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggat |
45493756 |
T |
|
| Q |
617 |
taacgcattctctcacaatcaagcttgatgagaagaattttctgcttttgagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493757 |
taacgcattctctcacaatcaagcttgatgagaagaattttctgctttggagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgt |
45493856 |
T |
|
| Q |
717 |
tctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtc |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493857 |
tctcgatccaaagattccactgcaattcgcatctgagagcgattgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtt |
45493956 |
T |
|
| Q |
817 |
ctattcacatggcttctttctacgatctctgatga |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45493957 |
ctattcacatggcttctttctacgatctctgatga |
45493991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 217 - 435
Target Start/End: Original strand, 45497921 - 45498138
Alignment:
| Q |
217 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgttgatgtggcaagtttgttactg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45497921 |
taatagagtatattgtaaagtctagatatactagttctatcaagttagtgtagttatagaagaagtaacaaactgtgctgatgtggcaagtttgttactg |
45498020 |
T |
|
| Q |
317 |
attcatttcattccttgctatactatataaggccagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45498021 |
attcatttcattcc-tgctatactatataaggctagctctctgatgtaacaaatatcaatgaatcataatgaaacactgaaaagcttagaagcaatatct |
45498119 |
T |
|
| Q |
417 |
ctctcatacttttctaata |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45498120 |
ttctcatacttttctaata |
45498138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 36121307 - 36121509
Alignment:
| Q |
19 |
atgctaattttaccacaggtatgtttacacgaatttcacacaaacaactcttcttttatatgaacttgcaaaccaaacatatacaatccaataatagcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36121307 |
atgctaattttaccacaggtatgtttacacgaatttcacacaaacaactcttcttttatatgaacttgcaaaccaaacatatacaatccaataatagcca |
36121406 |
T |
|
| Q |
119 |
aaaccagtccattt-aacttataaaatccctttattttccatcttttagggtctcaggtttggcatgaaagagaaagaaaggaataaagagagaaggttt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36121407 |
aaaccagtccatttaaacttataaaatccctttattttccatcttttagggtctcaggtttggcatgaaagagaaagaaaggaataaagagagaaggttt |
36121506 |
T |
|
| Q |
218 |
aat |
220 |
Q |
| |
|
||| |
|
|
| T |
36121507 |
aat |
36121509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 40566908 - 40567109
Alignment:
| Q |
19 |
atgctaattttaccacaggtatgtttacacgaatttcacacaaacaactcttcttttatatgaacttgcaaaccaaacatatacaatccaataatagcca |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40566908 |
atgctaattttaccagaggtatgtttacacgaatttcacacaaacaactcttcttttatatgaacttgcaaaccaaacatatacaatccaataatagcca |
40567007 |
T |
|
| Q |
119 |
aaaccagtccatttaacttataaaatccctttattttccatcttttagggtctcaggtttggcatgaaagagaaagaaaggaataaagagagaaggttta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40567008 |
aaaccagtccatttaacttataaaatcccttcattttccatcttttagggtctcaggtttggcatgaaagagaaagaaatgaataaagagagaaggttta |
40567107 |
T |
|
| Q |
219 |
at |
220 |
Q |
| |
|
|| |
|
|
| T |
40567108 |
at |
40567109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 38811955 - 38811753
Alignment:
| Q |
19 |
atgctaattttaccacaggtatgtttacacgaatttcacacaaacaactcttcttttatatgaacttgcaaaccaaacatatacaatccaataatagcca |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38811955 |
atgctaattttaccacaggtatgtctacaggaatttcacacaaacagctcttcttttatatgaacttgcaaaccaaacatatacaacccaataatagcca |
38811856 |
T |
|
| Q |
119 |
aaaccagtccatttaacttataaaatccctttattttccatcttttagggtctca-ggtttggcatgaaagagaaagaaaggaataaagagagaaggttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38811855 |
aaaccagtccatttaacttataaaatccctttattttccatcttttagggtctcagggtttggcatgaaagagaaagaaaagaataaagagagaaggttt |
38811756 |
T |
|
| Q |
218 |
aat |
220 |
Q |
| |
|
||| |
|
|
| T |
38811755 |
aat |
38811753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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