View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13727_low_10 (Length: 306)
Name: NF13727_low_10
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 41000874 - 41001166
Alignment:
| Q |
1 |
gctaatgtagttttggttatattaatattcatcaactctattttaaccacttatttgttatcttagatgaatagttagcttttcatttgaatcttgaaaa |
100 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41000874 |
gctaatgtagttttggttctattaataatcatcaactctattttaaccacttatttgttatcttagatgaatagttaacttttcatttgaatcttgaaaa |
41000973 |
T |
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| Q |
101 |
tctgaatctggtattagattttctgttactacttgctgcactaaaggttgttgctaagaagctatattctattcaaaatcgatttgaatccgtttttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41000974 |
tctgaatctggtattagattttctgttactacttgctgcactaaaggttgttgctaagaagctatattctattcaaaatcgatttgaatccgtttttatt |
41001073 |
T |
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| Q |
201 |
gatttatttacgctcgattattgacataagcacatgtgagattatcttactccttacagagtttattgaaatagcttatgacatgtcataaat |
293 |
Q |
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| T |
41001074 |
gatttatttacgctcgattattgacataagcacatatgagattatcttactccttacagagtttattgaaatagcttatgacatgtcataaat |
41001166 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 29649451 - 29649375
Alignment:
| Q |
59 |
tatcttagatgaatagttagctt-ttcatttgaatcttgaaaatctgaatctggtattagattttctgttactactt |
134 |
Q |
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||||||||||||||| ||| || || ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
29649451 |
tatcttagatgaataattaatttctttatttgaatcttgaaattctgaatctagtattagattttctggaactactt |
29649375 |
T |
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