View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13727_low_12 (Length: 289)

Name: NF13727_low_12
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13727_low_12
NF13727_low_12
[»] chr4 (3 HSPs)
chr4 (119-217)||(52262179-52262277)
chr4 (16-76)||(52262113-52262173)
chr4 (204-289)||(52250584-52250673)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
Q  119 taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52262179 taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa 52262277  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 52262113 - 52262173
Alignment:
Q  16 atggaaagtcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta 76  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52262113 atggaaagtcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta 52262173  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 52250584 - 52250673
Alignment:
Q  204 tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagct 289  Q
    |||||||||||||||||||||    | |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  52250584 tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagct 52250673  T

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