View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13727_low_13 (Length: 239)

Name: NF13727_low_13
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13727_low_13
NF13727_low_13
[»] chr5 (4 HSPs)
chr5 (21-222)||(20708465-20708664)
chr5 (21-199)||(34854439-34854615)
chr5 (91-190)||(11467330-11467429)
chr5 (116-198)||(25950040-25950122)
[»] chr7 (1 HSPs)
chr7 (87-198)||(2242630-2242740)
[»] chr1 (1 HSPs)
chr1 (21-176)||(12083337-12083490)
[»] chr4 (2 HSPs)
chr4 (104-198)||(36457553-36457647)
chr4 (22-197)||(33571536-33571712)
[»] scaffold0007 (1 HSPs)
scaffold0007 (50-198)||(172195-172340)
[»] chr8 (1 HSPs)
chr8 (115-194)||(31287205-31287283)
[»] chr3 (1 HSPs)
chr3 (120-199)||(20407941-20408020)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 20708664 - 20708465
Alignment:
Q  21 gatgtgaaattggacattccttgtcagagatatgttaatgtctcatataattgtttagatgactgataagttgagtggaaatcttaggatttactctagc 120  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  20708664 gatgtgaaattggacattccttgtcagtaatatgttaatgtctcata--attgtttagatgactgataagttgagtgtaaatcttaggatttagcctagc 20708567  T
Q  121 taggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctccgttttatttaacgatttctaga 220  Q
    |||||||||||||  | ||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||  ||||||||||||||    
T  20708566 taggtggattctccgtctacgacgggacgtgtaagaaggggtaaacaaagcaccgtttatcggagttaatctatctccgtcttacctaacgatttctaga 20708467  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 34854439 - 34854615
Alignment:
Q  21 gatgtgaaattggacattccttgtcagagatatgttaatgtctcatataattgtttagatgactgataagttgagtggaaatcttaggatttactctagc 120  Q
    |||||||| ||||||||| ||| |  |  |||||| |||||||||||  ||||||||||||||||||||| ||||||| | | |||||| |  | |||||    
T  34854439 gatgtgaatttggacatttcttatatgtaatatgtaaatgtctcata--attgtttagatgactgataagatgagtgggagtattaggactctccctagc 34854536  T
Q  121 taggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctccg 199  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||| | |||| ||||| ||||||||||||||||||    
T  34854537 taggtggattctctatctacgacgggacgtgcaagaaggggtaaacgggacaccatttatcggagttaatctatctccg 34854615  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 11467429 - 11467330
Alignment:
Q  91 ttgagtggaaatcttaggatttactctagctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaat 190  Q
    |||||| | ||| ||||||||  | ||||| ||||||||||||  | ||||| |||||||||||||||||||||||| |||||||||||| |||||||||    
T  11467429 ttgagtaggaatattaggattcgccctagccaggtggattctccgtctacgacgggacgtgtaagaaggggtaaacggggcaccgtttatcggagttaat 11467330  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 25950122 - 25950040
Alignment:
Q  116 ctagctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctcc 198  Q
    |||||||||||||| | |  | ||||| || | |||||||||||| |||||||| ||| | |||| |||||||||||||||||    
T  25950122 ctagctaggtggatacaccgtctacgacggaatgtgtaagaagggataaacgagacactgcttatcggagttaatctatctcc 25950040  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 2242630 - 2242740
Alignment:
Q  87 taagttgagtggaaatcttaggatttactctagctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagt 186  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||||  | || || ||||||||||||||||| |||||| |||| ||||||| |||||    
T  2242630 taagttgagtgggaatattaggattcaccctagctaggtggattctccgtctatgacgggacgtgtaagaagggataaacg-ggcatcgtttatcggagt 2242728  T
Q  187 taatctatctcc 198  Q
     |||||||||||    
T  2242729 aaatctatctcc 2242740  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 12083337 - 12083490
Alignment:
Q  21 gatgtgaaattggacattccttgtcagagatatgttaatgtctcatataattgtttagatgactgataagttgagtggaaatcttaggatttactctagc 120  Q
    |||||||||||||  |||||||||| |  |||||||||||||||  ||||||| ||||| |||| ||||||||||| | ||| ||||||||    |||||    
T  12083337 gatgtgaaattgggtattccttgtccgtaatatgttaatgtctc--ataattggttagacgactcataagttgagtaggaatattaggattcgtcctagc 12083434  T
Q  121 taggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgt 176  Q
    ||| |||||||||| | |||  | |||  |||||||| ||||||||  ||||||||    
T  12083435 tagatggattctctgtctacagttggaaatgtaagaaagggtaaacagggcaccgt 12083490  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 36457553 - 36457647
Alignment:
Q  104 ttaggatttactctagctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctcc 198  Q
    |||||||| || |||  ||| ||||||||| || || || |||| |||||||||||||||||||  |||| |||||| |||||||||||||||||    
T  36457553 ttaggattcaccctaattagatggattctccatctatgacgggatgtgtaagaaggggtaaacggagcactgtttatcggagttaatctatctcc 36457647  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 33571536 - 33571712
Alignment:
Q  22 atgtgaaattggacattccttgtcagagatatgttaatgtctcatataattgtttagatgactgataagttga-gtggaaatcttaggatttactctagc 120  Q
    ||||||| || | |||| |||||| | ||||||||||||||||||   ||||||||||| | || |||||| | |||| ||| |||| ||||   ||| |    
T  33571536 atgtgaacttagccatttcttgtctgcgatatgttaatgtctcatg--attgtttagataaatggtaagtttatgtgggaatattagtatttgtcctaac 33571633  T
Q  121 taggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggca--ccgtttattggagttaatctatctc 197  Q
    ||||||||| |||  | |||||| ||||||||||||||||||||||  ||||  | ||||||  |||||||||||||||    
T  33571634 taggtggatcctccgtctacgataggacgtgtaagaaggggtaaacagggcactctgtttatcagagttaatctatctc 33571712  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 172195 - 172340
Alignment:
Q  50 atatgttaatgtctcatataattgtttagatgactgataagttgagtggaaatcttaggatttactctagctaggtggattctctatttacgatgggacg 149  Q
    |||||||||||| ||||   ||| ||||||||| ||||||||||||||||||| ||||||||| | ||  | |||| |||||||  | |||||    ||     
T  172195 atatgttaatgtttcatg--attctttagatgattgataagttgagtggaaatattaggatttgccctttcaaggt-gattctccgtctacgactaaaca 172291  T
Q  150 tgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctcc 198  Q
    |||| ||| ||||||||| | |||||||||| |||||||||||||||||    
T  172292 tgtaggaaagggtaaacgggacaccgtttatcggagttaatctatctcc 172340  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 31287205 - 31287283
Alignment:
Q  115 tctagctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctat 194  Q
    ||||||||||||||||||||   ||| | ||||| |||||||||||||||| | ||||||||||||   |||||||||||    
T  31287205 tctagctaggtggattctcttactaccacgggacatgtaagaaggggtaaatg-ggcaccgtttatcaaagttaatctat 31287283  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 20408020 - 20407941
Alignment:
Q  120 ctaggtggattctctatttacgatgggacgtgtaagaaggggtaaacgaggcaccgtttattggagttaatctatctccg 199  Q
    ||||||||||| || || ||| |||||| ||||||||||||||||| |||  |  ||||||| || ||||||||||||||    
T  20408020 ctaggtggattttccatctacaatgggaagtgtaagaaggggtaaaagagatattgtttattagatttaatctatctccg 20407941  T

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