View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13727_low_3 (Length: 739)
Name: NF13727_low_3
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 31801933 - 31802647
Alignment:
| Q |
1 |
ttctaattctaatgggtgattctatgagtaaaatgagttctggacttctggtagttccatatgaataggatttgtgataagtaacccttttacttgctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
31801933 |
ttctaattctaatgggtgattctatgagtaaaatgagttctggacttctggtagttccatacgaataggatttgtgacaagtaacccttttacttcctat |
31802032 |
T |
|
| Q |
101 |
gataatttattccggtgtggttgtcaatggctaatgtatttgttagaacttagattgcttccaatgaagtttgtctcaactggtagatttagatattata |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31802033 |
gataatttattccggtgtggttgtcaatgggtaatgtatttgttagaacttagattgcttccaatgaagtttgtctcaactggtatatttagatattata |
31802132 |
T |
|
| Q |
201 |
gtctatatnnnnnnnnnntagcggtttaaatcctcttgatccttgattagtagatcttttgtgggtactactatgagtccttactaaaccttgtgcatat |
300 |
Q |
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| T |
31802133 |
gtctata---aataaaaatatcggtttaaatcctcttgatccttaattagtagatcttttgtgggcactactatgagtccttactaaaccttgtgcatat |
31802229 |
T |
|
| Q |
301 |
aattgaattaggtaactttcctcatcttatggtaatctgttgtggctgcaattggatatattgtgttggagctgattttggtttctgttatctttatatc |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
31802230 |
aattgaattaggtaattttcctcatcttatggtaatctgttgtggctgcaattggaaatattgtgttggagctgattttggtttctgttatttttataac |
31802329 |
T |
|
| Q |
401 |
agtggagtcatggtccatttaagtatcattaagagctaatatgatggtggtgtgtgatagtgcattggtgattttatgttggcttcttgaagcaccttgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31802330 |
agtggagtcatggtccatttaagtatcattaagagctaatatgatggtggtgtgtgatagtgcattggtgattttatgttggcttcttgaagcaccttgt |
31802429 |
T |
|
| Q |
501 |
tagaagatatgtgnnnnnnnnnnggtcatttgcattcttattaagttggctggtggcaggcttgatttgttaagtctttttatgtagttcaggggtgggt |
600 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31802430 |
tagaagatgtgt-ttttgtttttggtcatttgcattcttattaagttggctggtagcaggcttgctttgttaagtctttttatgtagttcaggggtgggt |
31802528 |
T |
|
| Q |
601 |
tgtaggttctgatctttgtagtgggtgagtttagaattccttcctctcatgttcattttaatgtatcagtggctggacaatgtgcttattacctattgtt |
700 |
Q |
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| T |
31802529 |
tgtaggttctggtctttgtagtgggtgagtttagaatttcttcctctcacgtgcattttgatgtatcagtggc-cgacaatgtgcttattacc---tgtt |
31802624 |
T |
|
| Q |
701 |
tgtagttgttggatctactttgt |
723 |
Q |
| |
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||| ||||||||| ||||||||| |
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| T |
31802625 |
tgttgttgttggagctactttgt |
31802647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 396 - 508
Target Start/End: Original strand, 8590440 - 8590552
Alignment:
| Q |
396 |
atatcagtggagtcatggtccatttaagtatcattaagagctaatatgatggtggtgtgtgatagtgcattggtgattttatgttggcttcttgaagcac |
495 |
Q |
| |
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||||||| | |||||||| |||| ||||| ||||||| | | |||||||||||||||||||||||||||||| || |||| ||||||| |||| ||||| |
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| T |
8590440 |
atatcagagaagtcatggcccatccaagtaccattaagtggttatatgatggtggtgtgtgatagtgcattggagaatttaagttggctgcttgtagcac |
8590539 |
T |
|
| Q |
496 |
cttgttagaagat |
508 |
Q |
| |
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|| |||||||| |
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|
| T |
8590540 |
tatgatagaagat |
8590552 |
T |
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