View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13727_low_5 (Length: 581)
Name: NF13727_low_5
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 3822235 - 3822432
Alignment:
| Q |
17 |
attctaagatgttaaaactcataaaagtttattagtacctcatcctcaggaataagacccgcccgatcacgtctctcttgaccgcgacgcaacaatgaag |
116 |
Q |
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| T |
3822235 |
attctaagatgttaaaactcataaaagtttattagtacctcaacctcaggaataagacccgccccatcacgtctctcttgaccgcgacgcaacaatgaag |
3822334 |
T |
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| Q |
117 |
cagcaactttgagaaagcccaagagagcaatgatccagaccaaaaggatcatcattgaaactggagttactatattgacattaagtaatgattcatta |
214 |
Q |
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| T |
3822335 |
cagcaactttgagaaagcccaagagagcaatgatccagaccaaaaggatcatcattgaaactggagttactatattgacattaagtaatgattcatta |
3822432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 4027393 - 4027433
Alignment:
| Q |
12 |
aggcaattctaagatgttaaaactcataaaagtttattagt |
52 |
Q |
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| T |
4027393 |
aggcaattctaagttgttaaaactcataaaagcttattagt |
4027433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 27416644 - 27416605
Alignment:
| Q |
133 |
gcccaagagagcaatgatccagaccaaaaggatcatcatt |
172 |
Q |
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| T |
27416644 |
gcccaagagagcaatgatccagcccaaaaggatcatcatt |
27416605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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