View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13727_low_7 (Length: 527)

Name: NF13727_low_7
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13727_low_7
NF13727_low_7
[»] chr7 (3 HSPs)
chr7 (13-510)||(7410584-7411068)
chr7 (80-318)||(34869768-34870006)
chr7 (72-116)||(29280858-29280902)
[»] chr1 (4 HSPs)
chr1 (13-321)||(36397817-36398128)
chr1 (166-233)||(2943318-2943385)
chr1 (136-235)||(26555336-26555435)
chr1 (118-238)||(38087739-38087859)
[»] chr8 (2 HSPs)
chr8 (118-238)||(1386462-1386582)
chr8 (197-241)||(1019562-1019606)
[»] chr3 (2 HSPs)
chr3 (168-233)||(1762720-1762785)
chr3 (199-235)||(29501636-29501672)
[»] chr4 (1 HSPs)
chr4 (56-206)||(44072442-44072592)
[»] chr5 (1 HSPs)
chr5 (139-225)||(16125795-16125881)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Complemental strand, 7411068 - 7410584
Alignment:
Q  13 accaccacaaatgaaaagcaaaggaaaaaccagggctattctccttcaactaccaccaagaatggagcttaatactatgaagaagttgatcaagagtcaa 112  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7411068 accaccaaaaatgaaaagcagaggaaaaaccagggctattctccttcaaccaccaccaagaatggagcttaatactatgaagaagttgatcaagagtcaa 7410969  T
Q  113 tattattgttaaaaattcttgagttgcgttctttcctaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagc 212  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7410968 tattattgttaaaaattcttgagttgggttctttccaaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagc 7410869  T
Q  213 atgcgcgccaaaaaactgttgtgtgtgacttctcatatccgaagaaacaactcttgagatatcacactagcgatgaacgagatttcaaataccgccaaag 312  Q
    ||||||| ||||||||||||||||||||||||||||||||                 |||| ||||||| ||||||||||||| |||||||| |||||||    
T  7410868 atgcgcgacaaaaaactgttgtgtgtgacttctcatatcc-----------------gataccacactaacgatgaacgagatgtcaaatactgccaaag 7410786  T
Q  313 aagtcacac----nnnnnnnnggtggttaatcgatttctctaaacatacaaactttaaaaattgattcctctaaaatttttattttgagtccttttaaaa 408  Q
    |||||||||            |||||||||||||||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  7410785 aagtcacactaaaaaaaaaaaggtggttaatcgattcgtctaaacatacaaactttaaaaattgattcctctacattttttattttgagtccttttaaaa 7410686  T
Q  409 aattcttcaaactttgtttgctctaaattttattgaaataatatttgcacaaccatttcacaataacttttgaataactctctttgacactcacatgatg 508  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7410685 aattcttcgaactttgtttgctctaaattttatagaaataatatttgcacaaccattttacaataacttttgaataactctctttgacactcacatgatg 7410586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 34870006 - 34869768
Alignment:
Q  80 cttaatactatgaagaagttgatcaagagtcaatat--tattgttaaaaattcttgagttgcgttctttcctaatgatccaaagacatgccaaccaaata 177  Q
    ||||||| ||| ||||||||||||| ||||| ||||  | ||||||||||||||| |||||| |||||||  |||||  |||||| |  |||||||||||    
T  34870006 cttaatattattaagaagttgatcatgagtcgatatgttgttgttaaaaattcttcagttgcattctttctaaatgactcaaagatagaccaaccaaata 34869907  T
Q  178 acttgaaagcaagctcaaatgttctttttgaaagcatgcgcgccaaaaaactgttgtgtgtgacttctcatatccgaagaaacaactcttgagatatcac 277  Q
    ||||||||||| || | |||||||||| |||||||||  ||||||||||| ||||  |||||||  |  |||||||||| |||||   ||||||| ||      
T  34869906 acttgaaagcaggcgcgaatgttctttctgaaagcat--gcgccaaaaaagtgtttcgtgtgacacccaatatccgaagtaacaatcgttgagatgtcca 34869809  T
Q  278 actagcgatgaacgagatttcaaataccgccaaagaagtca 318  Q
    || | |||||||| |||| ||||| ||  ||||||||||||    
T  34869808 accatcgatgaacaagatatcaaacactaccaaagaagtca 34869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 29280902 - 29280858
Alignment:
Q  72 gaatggagcttaatactatgaagaagttgatcaagagtcaatatt 116  Q
    ||||||||||||||||||| ||||||||||| | ||| |||||||    
T  29280902 gaatggagcttaatactatcaagaagttgattatgagacaatatt 29280858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 36398128 - 36397817
Alignment:
Q  13 accaccacaaatgaaaagcaaaggaaaaaccagggctattctccttcaactaccaccaagaatggagcttaatactatgaagaagttgatcaagagtcaa 112  Q
    ||||||| |||||||||  |||||||||||  |||| |||  |||||| | ||||||| ||||| | || |||||||| ||||||||||||| ||||| |    
T  36398128 accaccaaaaatgaaaattaaaggaaaaactcgggcaatttgccttcatccaccaccatgaatgaatctaaatactatcaagaagttgatcatgagtcga 36398029  T
Q  113 tat--tattgttaaaaattcttgagttgcgttctttcctaatgatccaaagacatgccaaccaaataactt-gaaagcaagctcaaatgttctttttgaa 209  Q
    |||  | ||||||||| ||||||||||||||||||||| ||| | ||||||| | |||||||||| |||||  ||||||||  |  ||||||||||||||    
T  36398028 tatgttgttgttaaaatttcttgagttgcgttctttccaaataacccaaagagaggccaaccaaacaacttaaaaagcaagtacggatgttctttttgaa 36397929  T
Q  210 agcatgcgcgccaaaaaactgttgtgtgtgacttctcatatccgaagaaacaactcttgagatatcacactagcgatgaacgagatttcaaataccgcca 309  Q
     |||||| |  ||||||| ||||| | |||||  || ||||| |||| ||||||| || ||||  |  |  | |||||||| |||| ||||||||  |||    
T  36397928 tgcatgcacatcaaaaaattgttgcgcgtgacacctaatatctgaagtaacaactgttaagatgcccaatcaacgatgaacaagatatcaaatactacca 36397829  T
Q  310 aagaagtcacac 321  Q
    ||||||||||||    
T  36397828 aagaagtcacac 36397817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 2943318 - 2943385
Alignment:
Q  166 gccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgccaaaaaactgttg 233  Q
    |||||||||| |||||||||||||||   ||||||||||||||| ||||||||| |||||||||||||    
T  2943318 gccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaatgcatgcgcgtcaaaaaactgttg 2943385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 26555336 - 26555435
Alignment:
Q  136 ttgcgttctttcctaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgccaaaaaactgttgtg 235  Q
    |||| |||||||  ||||| |||||||||  ||||||||| ||||||||| ||||  ||||| | ||||||||||||||| | || |||||| |||||||    
T  26555336 ttgctttctttcaaaatgacccaaagacagaccaaccaaacaacttgaaaacaagaacaaatttcctttttgaaagcatgggtgcaaaaaaattgttgtg 26555435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 38087739 - 38087859
Alignment:
Q  118 ttgttaaaaattcttgagttgcgttctttcctaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcg 217  Q
    ||||| ||||||||| | || |||||||||  ||||  ||||| ||| ||||| || | ||| ||||||||    ||||  |||||||||||||||||||    
T  38087739 ttgtttaaaattcttaaattacgttctttctaaatggcccaaacacaggccaatcacacaacctgaaagcataaacaaagtttctttttgaaagcatgcg 38087838  T
Q  218 cgccaaaaaactgttgtgtgt 238  Q
    || ||||| | ||||||||||    
T  38087839 cgacaaaacattgttgtgtgt 38087859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 1386582 - 1386462
Alignment:
Q  118 ttgttaaaaattcttgagttgcgttctttcctaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcg 217  Q
    ||||| ||||||||  | || |||||||| | ||||| ||||||||| |||||||||| |||||||||||||||   |||||||||||||||||| | ||    
T  1386582 ttgtttaaaattctcaaattacgttcttttcaaatgacccaaagacaggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaaagcgtacg 1386483  T
Q  218 cgccaaaaaactgttgtgtgt 238  Q
    | ||||||||||  |||||||    
T  1386482 caccaaaaaacttatgtgtgt 1386462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 1019562 - 1019606
Alignment:
Q  197 tgttctttttgaaagcatgcgcgccaaaaaactgttgtgtgtgac 241  Q
    ||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  1019562 tgttcttattgaaagtatgcgcgccaaaacactgttgcgtgtgac 1019606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 1762785 - 1762720
Alignment:
Q  168 caaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgccaaaaaactgttg 233  Q
    |||||||| ||||| ||||||||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  1762785 caaccaaacaacttcaaagcaagcgcaaatgttctttttgaatgcatgcacgccaaaaagctgttg 1762720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29501672 - 29501636
Alignment:
Q  199 ttctttttgaaagcatgcgcgccaaaaaactgttgtg 235  Q
    |||| |||||||||| |||||||||||||||||||||    
T  29501672 ttctatttgaaagcaagcgcgccaaaaaactgttgtg 29501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 44072592 - 44072442
Alignment:
Q  56 cttcaactaccaccaagaatggagcttaatactatgaagaagttgatcaagagtcaatattat--tgttaaaaattcttgagttgcgttctttcctaatg 153  Q
    ||||||| ||||| || |||| ||||||||||||| |||||||||||||||||||   |||||  ||||  | | ||   | |||||| |||| |  |||    
T  44072592 cttcaaccaccacaaaaaatgaagcttaatactatcaagaagttgatcaagagtcgccattatgttgttggacactca--aattgcgtccttttcagatg 44072495  T
Q  154 atccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttcttttt 206  Q
    | |||||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  44072494 acccaaagacagaccaaccaaataacctgaaagcaagcgcaaatgttcttttt 44072442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 16125795 - 16125881
Alignment:
Q  139 cgttctttcctaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgccaaaa 225  Q
    |||||||||  |||||  |||||||| |||||||||| ||| | ||||||||| ||||||||||| ||||||| ||| ||| |||||    
T  16125795 cgttctttcgaaatgacacaaagacaggccaaccaaacaacctaaaagcaagcacaaatgttcttattgaaagtatgtgcggcaaaa 16125881  T

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