View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13727_low_9 (Length: 346)
Name: NF13727_low_9
Description: NF13727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13727_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 80 - 330
Target Start/End: Original strand, 40471363 - 40471605
Alignment:
| Q |
80 |
ccccacaccactctcatctcctctccaatccaagctagccatagaaactacacagtcctaagttaagtccacagagagagtgaggctataccactatagt |
179 |
Q |
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| T |
40471363 |
ccccacaccactctcatctcctctccaa-----gctagccatagaaactacacagtcctaagtttagtccacagagagagtgaggctataccactatagt |
40471457 |
T |
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| Q |
180 |
agtagtacacaaagtgatatggagggagtggtgaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgtt |
279 |
Q |
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| T |
40471458 |
---agtacacaaagtgatatggagggagtggtgaaaacagaggaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgtt |
40471554 |
T |
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| Q |
280 |
ctgtgaagaagatgatatgggatcagtttgttgatcctaagggcaataatt |
330 |
Q |
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| T |
40471555 |
ctgtgaagaagatgatgtgggatcagtttgttgatcctaagggcaataatt |
40471605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 40481104 - 40481218
Alignment:
| Q |
208 |
tggtgaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtt |
307 |
Q |
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| T |
40481104 |
tggtgaaaacagaggaaacagagccatggcacaaaccaaaaaatgggagtgtcttccctgcaaataaacgttcggtgaagaagatgatgtgggataagat |
40481203 |
T |
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| Q |
308 |
tgttgatcctaaggg |
322 |
Q |
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| T |
40481204 |
tgttgatcctaaggg |
40481218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 40491618 - 40491717
Alignment:
| Q |
212 |
gaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgtt |
311 |
Q |
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| T |
40491618 |
gaaaacagtggaaacagaggcatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgtt |
40491717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 40501536 - 40501651
Alignment:
| Q |
187 |
cacaaagtgatatggagggagtggtgaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaa |
286 |
Q |
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| T |
40501536 |
cacaaagtgatatgcagggagttgtgaaaacagaggaaacagaggcatggcccaaaccgaagaataagagtgtcttccctgcaaagaaacgctctgtgaa |
40501635 |
T |
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| Q |
287 |
gaagatgatatgggat |
302 |
Q |
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| T |
40501636 |
gcaaatgatatgggat |
40501651 |
T |
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