View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13728_high_5 (Length: 369)

Name: NF13728_high_5
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13728_high_5
NF13728_high_5
[»] chr1 (13 HSPs)
chr1 (15-221)||(9171318-9171524)
chr1 (15-221)||(9179300-9179506)
chr1 (15-154)||(9156777-9156916)
chr1 (283-366)||(9171173-9171256)
chr1 (283-366)||(9179155-9179238)
chr1 (27-147)||(9219560-9219680)
chr1 (31-145)||(9162597-9162711)
chr1 (284-366)||(9200740-9200822)
chr1 (53-154)||(9201075-9201176)
chr1 (307-360)||(9162353-9162406)
chr1 (307-366)||(9118046-9118105)
chr1 (76-148)||(9117731-9117803)
chr1 (178-218)||(9200902-9200942)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 9171524 - 9171318
Alignment:
Q  15 cataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcataga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9171524 cataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcataga 9171425  T
Q  115 cgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgatgaagaatacttgagttcgatca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171424 cgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgatgaagaatacttgagttcgatca 9171325  T
Q  215 tccatac 221  Q
    |||||||    
T  9171324 tccatac 9171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 9179506 - 9179300
Alignment:
Q  15 cataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcataga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9179506 cataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcataga 9179407  T
Q  115 cgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgatgaagaatacttgagttcgatca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179406 cgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgatgaagaatacttgagttcgatca 9179307  T
Q  215 tccatac 221  Q
    |||||||    
T  9179306 tccatac 9179300  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 9156916 - 9156777
Alignment:
Q  15 cataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcataga 114  Q
    |||||||||||||||||||||||| |  ||||| |   ||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||    
T  9156916 cataaatgaagatcattgtcgcaatactgatggatctcatgaatgtttctgtcctgatggacactctggaaatggaacattggaaggagggtgtcataga 9156817  T
Q  115 cgagatgttattaccaaggttgccattggtaagcacctaa 154  Q
    ||||| || || ||||||||||||||||||||||||||||    
T  9156816 cgagaggtcatcaccaaggttgccattggtaagcacctaa 9156777  T

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Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 9171256 - 9171173
Alignment:
Q  283 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171256 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 9171173  T

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Target: chr1; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 9179238 - 9179155
Alignment:
Q  283 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179238 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 9179155  T

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Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 9219680 - 9219560
Alignment:
Q  27 tcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcatagacgagatgttatt 126  Q
    |||||||||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||||||  ||||||| | ||||||||||||||| || ||    
T  9219680 tcattgtcgcaacacggatgggttttacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggttgtcatagacgagatattgtt 9219581  T
Q  127 accaaggttgccattggtaag 147  Q
    |||||||||||||||||||||    
T  9219580 accaaggttgccattggtaag 9219560  T

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Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 9162711 - 9162597
Alignment:
Q  31 tgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcatagacgagatgttattacca 130  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||   |||||| | ||||||||||||||| || ||| ||    
T  9162711 tgtcgcaacacggatggattatatgaatgtttctgtcctgatggacaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatca 9162612  T
Q  131 aggttgccattggta 145  Q
    |||||||||||||||    
T  9162611 aggttgccattggta 9162597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 9200822 - 9200740
Alignment:
Q  284 tcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 366  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  9200822 tcatgaatcaatcaatttcaacgcatttcatatgcaggagcaagtgctggaatcattgttctatttgtcgcgatttcttctct 9200740  T

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Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 9201176 - 9201075
Alignment:
Q  53 atgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacggtgtcatagacgagatgttattaccaaggttgccattggtaagcacct 152  Q
    |||||||||| |||||||||||||||||||||||||||||   || |||| | ||||||| || ||||||||||||||||||||| ||||||||| ||||    
T  9201176 atgaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacct 9201077  T
Q  153 aa 154  Q
    ||    
T  9201076 aa 9201075  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 9162406 - 9162353
Alignment:
Q  307 catttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 360  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  9162406 catttcaaatgcaggagcaagtgctggaatcattattctatttgtggcgatttc 9162353  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 9118046 - 9118105
Alignment:
Q  307 catttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttcttctct 366  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||| |||||| |||||    
T  9118046 catttcaaatgcaggatcaagtgctggaatcgttattctatttgtggggatttcatctct 9118105  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 9117731 - 9117803
Alignment:
Q  76 caatctggaaatggaacaaaggaaggacggtgtcatagacgagatgttattaccaaggttgccattggtaagc 148  Q
    ||||| || |||||||||| ||||||| ||||||||| || ||||||  ||| |||||||| |||||||||||    
T  9117731 caatccggcaatggaacaagggaaggagggtgtcatacacaagatgtagttatcaaggttgtcattggtaagc 9117803  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 9200942 - 9200902
Alignment:
Q  178 taagatcaaattgatgaagaatacttgagttcgatcatcca 218  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  9200942 taagatcaaattgatctagaatacttgagttcgatcatcca 9200902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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