View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_high_6 (Length: 312)
Name: NF13728_high_6
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5832971 - 5832782
Alignment:
| Q |
1 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcactggcaagctttgctcaccagcttgtt |
100 |
Q |
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| T |
5832971 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaactttgctcaccagcttgtt |
5832872 |
T |
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| Q |
101 |
acaaaaagtgccctaacattgtcgaccttttcttcaatatggctgctggagagggtaagaatattgttcatttttaatcttacactatca |
190 |
Q |
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| T |
5832871 |
acaaaaagtgccctaacattgttgaccttttcttcaatatggctgctggagagggtaagaatattgttcatttttaatcttacactatca |
5832782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5828784 - 5828943
Alignment:
| Q |
1 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcactggcaagctttgctcaccagcttgtt |
100 |
Q |
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| T |
5828784 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtt |
5828883 |
T |
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| Q |
101 |
acaaaaagtgccctaacattgtcgaccttttcttcaatatggctgctggagagggtaaga |
160 |
Q |
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| T |
5828884 |
tctctaagtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaaga |
5828943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 5823093 - 5822936
Alignment:
| Q |
1 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcactggcaagctttgctcaccagcttgtt |
100 |
Q |
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| T |
5823093 |
tgtgtagaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtt |
5822994 |
T |
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| Q |
101 |
acaaaaagtgccctaacattgtcgaccttttcttcaatatggctgctggagagggtaa |
158 |
Q |
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| T |
5822993 |
tctctaagtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaa |
5822936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 24038591 - 24038420
Alignment:
| Q |
1 |
tgtgtggaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcactggcaagctttgctcaccagcttgtt |
100 |
Q |
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|||||| |||||||||| ||||| || | || ||| || ||||| || ||||| || |||||||||||||||| | ||| ||||| ||| || |||||| |
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| T |
24038591 |
tgtgtgaaagcatgtggagttgaaaggaattttgtcggaatttcttccgatgcattgcttgagccacaattcacagccaaactttgttcatcatcttgtt |
24038492 |
T |
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| Q |
101 |
acaaaaagtgccctaacattgtcgaccttttcttcaatatggctgctggagagggtaagaatattgttcattt |
173 |
Q |
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| T |
24038491 |
accaaaattgccccaatattgttgacctttacttcaatttggctgctggggaaggtaag-atatttttcattt |
24038420 |
T |
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