View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_high_8 (Length: 297)
Name: NF13728_high_8
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 6424173 - 6424451
Alignment:
| Q |
1 |
ctcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacagtttgtggttttggatagcctaatcaacaaaatataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
6424173 |
ctcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacaatttgttgttttggatagcctaatcaacaaaatataat |
6424272 |
T |
|
| Q |
101 |
ttagtcaccgtacatcatttgaataaaaatgaaccatttctctagaaaaacattaatatcttgtgtcattacctgttctacagtgatcccgcccaagttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6424273 |
ttagtcaccgtacatcatttgaataaaaatgaaccatttctctagaaaaacattaatatcttgtgtcattacctgttctacagtgatcccgcccaagttt |
6424372 |
T |
|
| Q |
201 |
ggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagcttgctcttatgtgggaact |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6424373 |
ggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagcttgctcttatgtgggaact |
6424451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 6352616 - 6352720
Alignment:
| Q |
164 |
tgtcattacctgttctacagtgatcccgcccaagtttggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagcttg |
263 |
Q |
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|||||||||||||||||| |||| ||| |||| |||||||||||| | ||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
6352616 |
tgtcattacctgttctacggtgaccccacccatgtttggctccaagttttctttggttatggtgctggtattatcaccaaatttttggctatctagcttg |
6352715 |
T |
|
| Q |
264 |
ctctt |
268 |
Q |
| |
|
||||| |
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| T |
6352716 |
ctctt |
6352720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 6321472 - 6321577
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacagtttgtggttttggatagcctaatcaacaaaatataatt |
101 |
Q |
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|
|||| ||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||| || ||| ||||||||||||||| | |||||||||||||| |
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| T |
6321472 |
tcagctgcatttattttcctcagatatggatatattgagtcatggtgatcaagtatgtaaagcctgttgttttggatagcctattgaacaaaatataatt |
6321571 |
T |
|
| Q |
102 |
tagtca |
107 |
Q |
| |
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|||||| |
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| T |
6321572 |
tagtca |
6321577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 6331977 - 6332082
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacagtttgtggttttggatagcctaatcaacaaaatataatt |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| | ||||| ||||||||| ||||| || ||| ||||||||||||||| |||| ||||||||||| |
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| T |
6331977 |
tcagttgagtttattttcctcaaatatggaaatattgggtcatggtgatcaagtatgtaaagcctgttgttttggatagcctattcaaaaaaatataatt |
6332076 |
T |
|
| Q |
102 |
tagtca |
107 |
Q |
| |
|
|||||| |
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|
| T |
6332077 |
tagtca |
6332082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 7459412 - 7459519
Alignment:
| Q |
161 |
ttgtgtcattacctgttctacagtgatcccgcccaagtttggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagc |
260 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| |||| |||||||||||| || || ||||||| |||||||| ||||| |||||| || |||||||| | |
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| T |
7459412 |
ttgtgacattacctgttctactgtgacccctcccatgtttggctccaagtgatcaatggttattgtgctggtattatcaccatatagtttgctatctaac |
7459511 |
T |
|
| Q |
261 |
ttgctctt |
268 |
Q |
| |
|
|||||||| |
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|
| T |
7459512 |
ttgctctt |
7459519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 6363421 - 6363489
Alignment:
| Q |
169 |
ttacctgttctacagtgatcccgcccaagtttggctccaattgttctttggttatggtgctggtgttat |
237 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
6363421 |
ttacctgttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattat |
6363489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 6289273 - 6289387
Alignment:
| Q |
165 |
gtcattacctgttctacagtgatcccgcccaagtttggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagcttgc |
264 |
Q |
| |
|
|||||||| | ||||||||||| ||| ||| ||| ||| ||| |||||||||||||| ||||| || ||||| || || | |||||||| |||||||| |
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| T |
6289273 |
gtcattacttcttctacagtgaccccatccatatttagctgcaactgttctttggttattgtgctcgtattatcaccgtagtcttggctatttagcttgc |
6289372 |
T |
|
| Q |
265 |
tcttatgtgggaact |
279 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
6289373 |
tctttggtgggaact |
6289387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7459164 - 7459246
Alignment:
| Q |
1 |
ctcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacagtttgtggttttggatagcct |
83 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || || | ||||||||| ||||||| ||| | |||||||||||||| |
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| T |
7459164 |
ctcagttgcatttattctcctcaaatatggaattagtagatcgtggtgatcaagtatgtacaatttattgttttggatagcct |
7459246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 6274593 - 6274724
Alignment:
| Q |
2 |
tcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacagtttgtggttttggatagcctaatcaacaaa-atataat |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||| | || |||||| ||||||| ||||| | ||||||||||||| | || ||| ||||||| |
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|
| T |
6274593 |
tcagctgcatttattttcctcagatatggatataacgagtcgtggtaatcaagtatgtacaatttgttggtttggatagcctattaaaaaaatatataat |
6274692 |
T |
|
| Q |
101 |
ttagtcaccgtacatcatttgaataaaaatgaa |
133 |
Q |
| |
|
| ||||| | | || ||||||||||||||||| |
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| T |
6274693 |
tcagtcattgca-ataatttgaataaaaatgaa |
6274724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 6370345 - 6370392
Alignment:
| Q |
197 |
gtttggctccaattgttctttggttatggtgctggtgttatctccata |
244 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||| ||||| |
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|
| T |
6370345 |
gtttggctccaagtgttctttggttattgtgctggtattatcaccata |
6370392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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