View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_13 (Length: 239)
Name: NF13728_low_13
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 31346760 - 31346977
Alignment:
| Q |
18 |
agtagaagctgatgacagttcttgattcccaaaccacctttgaaacatgccatttccatataccacagatgagatatcatcatcagaatatctcccaaaa |
117 |
Q |
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| T |
31346760 |
agtagaagctgatgacagttcttgattcccaaaccacctttgaagcatgccatttccatataccacagatgagatatcatcatcagaatatctcccaaaa |
31346859 |
T |
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| Q |
118 |
gaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaagaaaaagtttg |
217 |
Q |
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| T |
31346860 |
gaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacagcgattggtcttgagagaagaaaaagtttg |
31346959 |
T |
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| Q |
218 |
atgaatttccgaccattg |
235 |
Q |
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| T |
31346960 |
acgaatttccgaccattg |
31346977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 31357432 - 31357637
Alignment:
| Q |
18 |
agtagaagctgatgacagttcttgattcccaaaccacctttgaaacatgccatttccatataccacagatgagatatcatcatcagaatatctcccaaaa |
117 |
Q |
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||||||||||| ||||| |||||||||| | || || ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |
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| T |
31357432 |
agtagaagctggtgacaattcttgattctctgacaacttttgaaacatgccatttccatataccacagatgagatatcagcatcagagtctctcccaaaa |
31357531 |
T |
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| Q |
118 |
gaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaagaaaaagtttg |
217 |
Q |
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| T |
31357532 |
gaaaa------------gatgttctttgaggttgttccaatattctcattctccaactgcatcctcaacagcaattgttcttgagagaagaaaaagtttg |
31357619 |
T |
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| Q |
218 |
atgaatttccgaccattg |
235 |
Q |
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| T |
31357620 |
acgaattcccgaccattg |
31357637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2920549 - 2920466
Alignment:
| Q |
18 |
agtagaagctgatgacagttcttgattcccaaaccacctttgaaacatgccatttccatataccacagatgagatatcatcatc |
101 |
Q |
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||||||||||| ||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
2920549 |
agtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgagatatcagcatc |
2920466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2925934 - 2925851
Alignment:
| Q |
18 |
agtagaagctgatgacagttcttgattcccaaaccacctttgaaacatgccatttccatataccacagatgagatatcatcatc |
101 |
Q |
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||||||||||| ||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
2925934 |
agtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgagatatcagcatc |
2925851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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