View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_14 (Length: 239)
Name: NF13728_low_14
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 5677607 - 5677399
Alignment:
| Q |
19 |
tatattgcttgcaaggaaagtcaattgtgtacatctgtaagaagtgatagtggctccgacggagtgatgtcgtcttctgtatcatctcaacagagaccag |
118 |
Q |
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| T |
5677607 |
tatattgcttgcaacgaaagtcaattgtgtacatctgtaagaagtgaaagtggctccgacggagtgatgtcgtcttctgtatcatctcaacagagaccag |
5677508 |
T |
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| Q |
119 |
ttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctat |
218 |
Q |
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| T |
5677507 |
ttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctat |
5677408 |
T |
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| Q |
219 |
tggtcctat |
227 |
Q |
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| T |
5677407 |
tggtcctat |
5677399 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 39777900 - 39778012
Alignment:
| Q |
115 |
ccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttg |
214 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| | | || |
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| T |
39777900 |
ccagctgttgattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagttctaattgcaatgatggctagagggtttaaaaattgtg |
39777999 |
T |
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| Q |
215 |
ctattggtcctat |
227 |
Q |
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| T |
39778000 |
gtattggtcctat |
39778012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 47798250 - 47798162
Alignment:
| Q |
103 |
tctcaacagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgat |
191 |
Q |
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| T |
47798250 |
tctcaccagaggccagctattgattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgat |
47798162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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