View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_16 (Length: 206)
Name: NF13728_low_16
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 37564153 - 37564333
Alignment:
| Q |
13 |
ataatactaattgctgatactgtaactaagttaacagctcgttgtgaactatgtggtaaacgcgccttctttaccttgaggaagacgggagagaaacaaa |
112 |
Q |
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| T |
37564153 |
ataataccaattgctgatactgtaactaagttaacagctcgttgtgaactatgcggtaaacgcgccttctttaccttgaggaagacgggagagaaacaaa |
37564252 |
T |
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| Q |
113 |
ctgaactaattggtggggctgatttatacatgcctgtttgccgccatcactatgtgaatggtcaagttgttgtagaagctg |
193 |
Q |
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| T |
37564253 |
ctgaactaattggtggggctgatttatacatgcctgtttgccgccatcactatgtgaatggtcaagttgttgtagaagctg |
37564333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 37566189 - 37566361
Alignment:
| Q |
21 |
aattgctgatactgtaactaagttaacagctcgttgtgaactatgtggtaaacgcgccttctttaccttgaggaagacgggagagaaacaaactgaacta |
120 |
Q |
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| T |
37566189 |
aattgctcatattgtaactaagttggcggctcgttgtgagctatgcggtaaacatgccttctttactttaagaaagatggaagggaaacaaactgaacta |
37566288 |
T |
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| Q |
121 |
attggtggggctgatttatacatgcctgtttgccgccatcactatgtgaatggtcaagttgttgtagaagctg |
193 |
Q |
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| T |
37566289 |
attggcggggctgatttgtaaacgcccgtatgccgccctcattatgtgaatggtcaagttgttgtagaagctg |
37566361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 37162645 - 37162544
Alignment:
| Q |
80 |
tctttaccttgaggaagacgggagagaaacaaactgaactaattggtggggctgatttatacatgcctgtttgccgccatcactatgtgaatggtcaagt |
179 |
Q |
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| T |
37162645 |
tctttactttgaggaagacaggagaaaaacaaactgaactaattggtggggctgatttatacatgccggtttgcagccatcactatgtgaatggccaagt |
37162546 |
T |
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| Q |
180 |
tg |
181 |
Q |
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|| |
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| T |
37162545 |
tg |
37162544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 37161362 - 37161310
Alignment:
| Q |
13 |
ataatactaattgctgatactgtaactaagttaacagctcgttgtgaactatg |
65 |
Q |
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| T |
37161362 |
ataataccaattgctgaaactgcaactaagctgacagctcgttgtgaactatg |
37161310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 37205899 - 37205847
Alignment:
| Q |
13 |
ataatactaattgctgatactgtaactaagttaacagctcgttgtgaactatg |
65 |
Q |
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| T |
37205899 |
ataataccaattgctgaaactgcaactaagctgacagctcgttgtgaactatg |
37205847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 37162689 - 37162648
Alignment:
| Q |
24 |
tgctgatactgtaactaagttaacagctcgttgtgaactatg |
65 |
Q |
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| T |
37162689 |
tgctgattctataactaagttaacagctcgatgtgaactatg |
37162648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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