View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_2 (Length: 500)
Name: NF13728_low_2
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 51547462 - 51546977
Alignment:
| Q |
1 |
tattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcatt |
100 |
Q |
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| T |
51547462 |
tattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcatt |
51547363 |
T |
|
| Q |
101 |
aatggtgctaaagtttcccgttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggcgatctttgcttgataaccacgtgaga |
200 |
Q |
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| T |
51547362 |
aatggtgctaaagtttcccgttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggtgatctttgcttgataaccacatgaga |
51547263 |
T |
|
| Q |
201 |
gcatccattaaacgccggtttccatgtcctttagaagctcttacctcaggcttaggaaacattgacagagaattactaacatgcttgtaagtgttgatca |
300 |
Q |
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| T |
51547262 |
gcatccattaaacgccggtttccatgtcctttagaagctcttacctcaggcttaggaaacattgacagagaattactaacatgtttgtaagtgttgatca |
51547163 |
T |
|
| Q |
301 |
ctgaatcaactaaaacttgcttcagtgtacctgaagcagaatctaagctttctaaacatgtgtttttgttggtaagggctgcacttagataagttcttgc |
400 |
Q |
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| T |
51547162 |
ctgaatcaactaaaacttgcttcagtgtacctgaagcagaatctaagctttctaaacatgtgttcttgttggtaagggctgcacttagataagttcttgc |
51547063 |
T |
|
| Q |
401 |
atcaactaactttctagattttgatgaacgaattccagacaatgatctttttag-tgaagataaggtagattgttgaagttcttcg |
485 |
Q |
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| T |
51547062 |
atcaactaactttctagattttgatgaacgaattccagacaatgatctttttagttgaagataaggtagattgttgaagttcttcg |
51546977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 481
Target Start/End: Complemental strand, 19475032 - 19474877
Alignment:
| Q |
326 |
tgtacctgaagcagaatctaagctttctaaacatgtgtttttgttggtaagggctgcacttagataagttcttgcatcaactaactttctagattttgat |
425 |
Q |
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|||||| ||||||||||| | | ||||||||||||||||||||||| ||||||||||| || || |||| |||||| ||| ||||| || || |
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| T |
19475032 |
tgtaccagaagcagaatcaagaccatctaaacatgtgtttttgttggttagggctgcactgaggtagattctagcatcagctatgtttcttttgttcgag |
19474933 |
T |
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| Q |
426 |
gaacgaattccagacaatgatctttttagtgaagataaggtagattgttgaagttc |
481 |
Q |
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| T |
19474932 |
gaacggattccggataatgatcttttcaatgaagttaaggttgattgatgaagttc |
19474877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 19475343 - 19475223
Alignment:
| Q |
12 |
atttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaa |
111 |
Q |
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|||||||||||||| ||||| ||||||||| ||||| || | ||||||| | | || |||||||||||||| | || || |||||||| ||||||| |
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| T |
19475343 |
atttcaacattttcatcataatacccttctttaacataaataactatcctaaccaaactattatttggagcaaagtttatagcatcattaatagtgctaa |
19475244 |
T |
|
| Q |
112 |
agtttcccgttccatctgcag |
132 |
Q |
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||||||| |||||||||||| |
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| T |
19475243 |
agtttccacttccatctgcag |
19475223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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