View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_3 (Length: 482)
Name: NF13728_low_3
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 34821373 - 34820921
Alignment:
| Q |
18 |
gcatgtacatttatttttcaatttgttaatatcaatatggtttcaattgaccatgtattgatggatccaaaaagctagattaatatcacaaagtccatga |
117 |
Q |
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| T |
34821373 |
gcatgtacatttatttttcaatttgttaatatcaatatggtttcaattgaccatgtattgatggatccaaaaagctagattaatatcacaaagtccatga |
34821274 |
T |
|
| Q |
118 |
ttgttgataattatgaaatcaaataagtattgtctctagttatgagttaatccattacgtacctaacagaccatagtaaatgttaagcaatgatctctaa |
217 |
Q |
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| T |
34821273 |
ttgttgataattatgaaatcaaataagtattgtctctagttatgagttaatccattacgtacctaacagaccatagtaaatgttaagcaatgatctctaa |
34821174 |
T |
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| Q |
218 |
tgatgtttgtggaaataatttacacaattaattgatatcaagtcttgcatttagggaagacaagtaaaattttatcttaaacaaatgatttgcaaatatt |
317 |
Q |
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| T |
34821173 |
tgatgtttgtggaaataatttacacaattaattgatatcaagtcttgcatttagggaagacaagtaaaattttatcttaaacaaatgatttgcaaatatt |
34821074 |
T |
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| Q |
318 |
tttaatttcaatgatttatttgcgcaatactatttgttgaacagatgaagaccgatggtgaagcttgtaaagtaaaatctcaaatgctcgagacatttga |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821073 |
tttaatttcaatgatttatttgcgcaataccatttgttgaacagatgaagaccgatggtgaagcttgtaaagtaaaatctcaaatgctcgagacatttga |
34820974 |
T |
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| Q |
418 |
ttatgcatggaacaaagttgataacggtaaacgacggcccaatgatattcttc |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820973 |
ttatgcatggaacaaagttgataacggtaaacgacggcccaatgatattcttc |
34820921 |
T |
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