View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_4 (Length: 461)
Name: NF13728_low_4
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 2245932 - 2245493
Alignment:
| Q |
1 |
ctccgaaacccaacttagttggatctttcaaatttggaaaatttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245932 |
ctccaaaacccaacttagttggatctttcaaatttggaaaatttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgc |
2245833 |
T |
|
| Q |
101 |
agcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245832 |
agcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactcct |
2245733 |
T |
|
| Q |
201 |
ctgtatagcttcttcttacaagggttcattaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaagggtttagtagagatagag |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
2245732 |
ctgtatagcttcttcttacaagggttcaccaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaaggggttagtag------ag |
2245639 |
T |
|
| Q |
301 |
attgatttgaaaatgaagacggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacc |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245638 |
attgatttgaaaatgaagaaggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacc |
2245539 |
T |
|
| Q |
401 |
taaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245538 |
taaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
2245493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 25986063 - 25985946
Alignment:
| Q |
70 |
tataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccac |
169 |
Q |
| |
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||||||| || | ||||||||| |||| || |||||||||| ||| |||| |||||||||| || ||||||||| || ||||| |||||||| || |
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| T |
25986063 |
tataagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaac |
25985964 |
T |
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| Q |
170 |
ccattttccccagtgtct |
187 |
Q |
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|||||||||||| ||||| |
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| T |
25985963 |
ccattttccccaatgtct |
25985946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 33470041 - 33469896
Alignment:
| Q |
66 |
agcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcag |
165 |
Q |
| |
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||||||||||| || ||||||||| ||||||| ||||||| || ||| |||| |||||||| | ||| ||| |||| ||| ||||| ||||||| |
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| T |
33470041 |
agcttataagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcag |
33469942 |
T |
|
| Q |
166 |
ccacccattttccccagtgtctctgtctcactcctctgtatagctt |
211 |
Q |
| |
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| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
33469941 |
caacccattttccccagtgcctttgtctcactcctctgtatagctt |
33469896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 33719007 - 33718963
Alignment:
| Q |
158 |
aatctcagccacccattttccccagtgtctctgtctcactcctct |
202 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
33719007 |
aatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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