View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13728_low_5 (Length: 417)
Name: NF13728_low_5
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 52451391 - 52451769
Alignment:
| Q |
19 |
caaggaagttatgcgaggttgatcaatttctggaaaaaaggataggtctattggtggctgatttagaagcaaaaaaccttctacataattgggtgcatta |
118 |
Q |
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| T |
52451391 |
caaggaagttatgcgaggttgatcaatttctggaaaaaaggataggtctagtggtggctgatttagaagcaaaaaaccttctacataattgggtgcatta |
52451490 |
T |
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| Q |
119 |
gtttcatctattccattcaatgagattaaatgttcttggtctccagaaaatgcagagaagtcgttgtaaagtaaacggagccactttacctacaagaaat |
218 |
Q |
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| T |
52451491 |
gtttcatctattccattcaatgagattaaatgttcttggtctccagaaaatgcagagaagtcgttgtaaagtaaacggagccactttacctacaagaaat |
52451590 |
T |
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| Q |
219 |
taatcaaacatttgtttaattagtaatttaggataatataataaaagaatttaccaaaatttaaggataatatatttatgattaatgaatatttttctaa |
318 |
Q |
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| T |
52451591 |
taatcaaacatttgtttaattagtaatttaggataatataataaaagaatttaccaaaatttaaggataatatatttatgattaatgcatatttttctaa |
52451690 |
T |
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| Q |
319 |
gtttgacttgcaaatatgcattatagcaaatggtaagcaactataattgtgattgtgacatactaacaagaaaccatatgaatttat |
405 |
Q |
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| T |
52451691 |
gtttgacttgcaaatatgcattatagcaaatggtaagc--------ttgtgattgtgacatactaacaagaaaccataagaatttat |
52451769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 17245272 - 17245200
Alignment:
| Q |
137 |
aatgagattaaatgttcttggtctccagaaaatgcagagaagtcgttgtaaagtaaacggagccactttacct |
209 |
Q |
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| T |
17245272 |
aatgagattaaatgttcttgatctgtggaaaatgcggaaaagtcgttgtaaattagacgcaaccactttacct |
17245200 |
T |
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