View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13728_low_9 (Length: 300)
Name: NF13728_low_9
Description: NF13728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13728_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 30037600 - 30037704
Alignment:
| Q |
9 |
gataatacttttactaagaaggataatgttattgagagtgatgcttttgattacagtggagggtacacactttcaacaaaagtggaacccaaatagatga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037600 |
gataatacttttactaagaaggataatgttattgagagtgatgcttttgattacagtggagggtacacactttcaacaaaagtggaacccaaatagatga |
30037699 |
T |
|
| Q |
109 |
tataa |
113 |
Q |
| |
|
||||| |
|
|
| T |
30037700 |
tataa |
30037704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 30037784 - 30037875
Alignment:
| Q |
194 |
gttgctgtatacaaaatataatggcgactattctttctgtggccaatagttttcttgtatgtattgtttaggaggaaatgtagcaagtttgt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30037784 |
gttgctgtatacaaaatataatggcgactattctttctgtggccaatagttttcttgtatgtattgtttaggaggaaatgtagcaagtttgt |
30037875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 30053646 - 30053735
Alignment:
| Q |
17 |
ttttactaagaaggataatgttattgagagtgatgcttttgattacagtggagggtacacactttcaacaaaagtggaacccaaatagat |
106 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
30053646 |
ttttacaaagaaggatgatggtattgagagtgatgcttttgattacagtggagggtacacattttcatctgaagtggaacccaaatagat |
30053735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 30053868 - 30053905
Alignment:
| Q |
239 |
atagttttcttgtatgtattgtttaggaggaaatgtag |
276 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
30053868 |
atagttttcatgtatggattgtttaggaggaaatgtag |
30053905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University