View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13729_high_2 (Length: 360)
Name: NF13729_high_2
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 6177387 - 6177053
Alignment:
| Q |
11 |
agattatactactgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacactaaatacttttac |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
6177387 |
agattatactaatgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacactaaatactgttgc |
6177288 |
T |
|
| Q |
111 |
taattatgatgttttatttcctacaatttcaaaatgcatttacagtaaatgttgtactatttcctgaatcaatgtgtctaatgctctttttcagtgatct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6177287 |
taattatgatgttttatttcctacaatttcaaaatgcatttacagtaaatgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatct |
6177188 |
T |
|
| Q |
211 |
gagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatatggatatacaggtatgatatactttataaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6177187 |
gagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatatggatatacaggtatgatatactttataaa |
6177088 |
T |
|
| Q |
311 |
ttgatctgtcacatcaaaaatagatattatcaatg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6177087 |
ttgatctgtcacatcaaaaatagatattatcaatg |
6177053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 6207197 - 6206891
Alignment:
| Q |
11 |
agattatactactgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacactaaatacttttac |
110 |
Q |
| |
|
||||||||| |||| |||||||| || || |||||||| ||||||||||||||||||||| |||||||||| |||||||||||| | || | | |
|
|
| T |
6207197 |
agattataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacac--actaaaataag |
6207100 |
T |
|
| Q |
111 |
taattatgatgttttattt-cctacaatttcaaaatgcatttacagtaaatgttgtactatttcc-tgaatcaatgtgtctaatgctctttttcagtgat |
208 |
Q |
| |
|
| | || |||||||||| || |||||||||||||||||| | ||||||| | || |||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
6207099 |
ttgtaattgtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgt--ctaatgctctttttcagtggt |
6207002 |
T |
|
| Q |
209 |
ctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatatggatatacaggtatgatatactttata |
308 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6207001 |
gtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatggatatacaggtatgataaactttata |
6206902 |
T |
|
| Q |
309 |
aattgatctgt |
319 |
Q |
| |
|
||||| ||||| |
|
|
| T |
6206901 |
aattggtctgt |
6206891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 6214747 - 6214612
Alignment:
| Q |
159 |
atgttgtactatttcctgaatcaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
258 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6214747 |
atgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaactataaatggatt |
6214648 |
T |
|
| Q |
259 |
aatatcaagtggtataagcatatggatatacaggta |
294 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
6214647 |
aatatcaagtggtataagcatttggatgtacaggta |
6214612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 6214857 - 6214769
Alignment:
| Q |
11 |
agattatactactgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacacta |
99 |
Q |
| |
|
||||||||| ||| | |||||||| || || |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
6214857 |
agattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacacta |
6214769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University