View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13729_high_4 (Length: 340)
Name: NF13729_high_4
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 3453808 - 3454130
Alignment:
| Q |
1 |
tataactaaaggaaacaaaagattaaggcagaataatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctaga |
100 |
Q |
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| T |
3453808 |
tataactaaaggaaacaaaagattaaggcagaataatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctaga |
3453907 |
T |
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| Q |
101 |
cctgtgcctccatattttcgagcatggtctgcactaacttgcatgtaccttctaaataaagtaggtatagccttttctgtgtgacattacaacatgagaa |
200 |
Q |
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| T |
3453908 |
cctgtgcctccatattttcgagcatggtctgcactaacttgcatgtaccttctaaataaagtaggtatagccttttctgtgtgacattacaacatgaaaa |
3454007 |
T |
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| Q |
201 |
agnnnnnnnttaagtacacttgctaaacaaaaatcaaatttcactatatgaattcaaaatataatcaattctaaaacaaaag-aaggaacgctgttacta |
299 |
Q |
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| T |
3454008 |
agaaaaaaattaagtacacttgctaaacaaaaatcaaatttcactatatgaatacaaaatataatcaattctaaaacaaaagaaaagaacgctgttacta |
3454107 |
T |
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| Q |
300 |
acacatacctggtatgccaattc |
322 |
Q |
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| T |
3454108 |
acacatacctggtatgccaattc |
3454130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 48696756 - 48696644
Alignment:
| Q |
68 |
tttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtaccttctaaataaagtaggta |
167 |
Q |
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| T |
48696756 |
tttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgcatgtaccttttgaataaactatgta |
48696657 |
T |
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| Q |
168 |
tagccttttctgt |
180 |
Q |
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| T |
48696656 |
ttgcattttctgt |
48696644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 24626792 - 24626877
Alignment:
| Q |
66 |
agtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtacctt |
151 |
Q |
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| T |
24626792 |
agtttactggttgtttgcatattgctagtcctagacttgtctctccaaacttttgagcgtgatctacaccaacttgcatgtacctt |
24626877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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