View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13729_high_5 (Length: 331)
Name: NF13729_high_5
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 42184731 - 42184424
Alignment:
| Q |
20 |
aatgaaactaaaacctcttggtttctcagattggagagttcgcattggaacaacaaggggattaagtaagagaggaaagggtttttcatgttgagctagt |
119 |
Q |
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| T |
42184731 |
aatgaaactaaaacctcttggtttctcagattggagagtttgcattggaacaacaaggggattaagtaagagaggaaagggtttttcatgttgagctagt |
42184632 |
T |
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| Q |
120 |
tcagaactgttatatagtggaaatgaattcagatactgagattcagtgttattatgataagaactttcattggtcattccaagtttgttgttatgcatca |
219 |
Q |
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| T |
42184631 |
tcagaactgttatatagtggaaatgaattcagatactgagattcagtgttattatgataagaactttcattggtcattccaagtttgttgttatgcatca |
42184532 |
T |
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| Q |
220 |
gagggttccatcttgaattagaagcaccaagggaaattggatctccattcagcatccactccaagccccttttcattcattcaattcaccaaatcaataa |
319 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42184531 |
gagggttccatcctgaattagaagcaccaagggaaattggatctccattcagcatccactccaagccccttttca----ttcaattcaccaaatcaataa |
42184436 |
T |
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| Q |
320 |
caaactagaaaa |
331 |
Q |
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|||||||||||| |
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| T |
42184435 |
caaactagaaaa |
42184424 |
T |
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