View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13729_high_6 (Length: 301)

Name: NF13729_high_6
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13729_high_6
NF13729_high_6
[»] chr4 (3 HSPs)
chr4 (8-255)||(36761618-36761865)
chr4 (13-118)||(49408690-49408795)
chr4 (8-163)||(40603835-40603990)
[»] chr5 (3 HSPs)
chr5 (13-156)||(13858265-13858407)
chr5 (20-166)||(6454436-6454581)
chr5 (13-106)||(13860047-13860140)
[»] chr3 (2 HSPs)
chr3 (14-156)||(34618918-34619059)
chr3 (8-118)||(49089508-49089618)
[»] chr7 (5 HSPs)
chr7 (16-166)||(22130555-22130701)
chr7 (16-166)||(40500405-40500551)
chr7 (8-139)||(41397742-41397873)
chr7 (8-143)||(48572748-48572883)
chr7 (38-144)||(26198904-26199009)
[»] chr1 (6 HSPs)
chr1 (8-152)||(46135737-46135880)
chr1 (14-154)||(4033151-4033291)
chr1 (8-135)||(3447267-3447393)
chr1 (13-166)||(3449028-3449180)
chr1 (101-166)||(12181520-12181584)
chr1 (8-118)||(11671013-11671123)
[»] chr8 (1 HSPs)
chr8 (8-85)||(7305557-7305634)
[»] chr2 (1 HSPs)
chr2 (78-156)||(14389692-14389769)
[»] chr6 (1 HSPs)
chr6 (8-127)||(1520460-1520578)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 36761865 - 36761618
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| ||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||     
T  36761865 ccaataaaatagctagcattgaaatcaaacttacaacatgagtaatgactcctcatttgcataccatttgaacttcgaatgaacaagtttacaaaatttg 36761766  T
Q  108 acgtacgaaaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaaaaccaaaagagattcttgttcctctgttttattatattgtatga 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  36761765 acgtacgaaaaatattttcaaagacaaaaatacgaggtctaatacggggtctaaaaaacaacaagagattcttgttcctctgttttattatattgtatga 36761666  T
Q  208 tatagatacaatatatatttttgttttgacaaaagtataaaataaact 255  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  36761665 tatagatacaatatatttttttgttttgacaaaagtataaaataaact 36761618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 49408795 - 49408690
Alignment:
Q  13 aaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgta 112  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||| ||| ||||||| || |  |||||||||||| ||||| ||||||| || ||    
T  49408795 aaaatagctagcattgaaatcgaacttacaatataaattatgactcctcatttacataccacttgagtttcgaatgaacatgtttagaaaatttgacata 49408696  T
Q  113 cgaaaa 118  Q
    ||||||    
T  49408695 cgaaaa 49408690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 40603990 - 40603835
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| |||||| ||| ||| ||||| ||| ||||||||| |  ||||| || || |  ||||| || || |||||||| ||||||  |||||||||||||    
T  40603990 ccaataaaatacctaacatcgaaatggaacttacaacataaactatgattcttcatcagcatatcacttgaacttcgagtgaacatatttataaaattta 40603891  T
Q  108 acgtacgaaaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaa 163  Q
    |||||| ||||||||||||| |||  |||||| |||| ||||||||||| ||||||    
T  40603890 acgtacaaaaaatattttcatagattaaaatatgaggcctaatacggggcctaaaa 40603835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 13858265 - 13858407
Alignment:
Q  13 aaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgta 112  Q
    |||||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||||| || | |||||| |||||| ||||| ||||||| ||||     
T  13858265 aaaatagctagcattgaaatcgaacttgcaacatgaattatgactcatcatttacataccacttgagcttcgagtgaacatgtttacaaaatttgacgtt 13858364  T
Q  113 cgaaaaatattttcagagacaaaaatacgaggtctaatacgggg 156  Q
    | ||||||||||||| | ||||||||| |||| |||||||||||    
T  13858365 c-aaaaatattttcaaaaacaaaaatatgaggcctaatacgggg 13858407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 6454436 - 6454581
Alignment:
Q  20 ctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtacgaaaaa 119  Q
    ||||||||||||||||| |||||| ||||  |||||||| || ||||||||||| || |||||||| |||||| ||||| ||||||| | |||||  |||    
T  6454436 ctagcattgaaatcgaacttacaatatgaactatgactcttcatttgcataccacttgaacttcgagtgaacatgtttacaaaatttgatgtacg-gaaa 6454534  T
Q  120 tattttcagagacaaaaatacgaggtctaatacggggtctaaaaaac 166  Q
    |||||||| | | ||||||| ||||||||||||  || |||||||||    
T  6454535 tattttcaaacataaaaatatgaggtctaatacaaggcctaaaaaac 6454581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 13860140 - 13860047
Alignment:
Q  13 aaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattt 106  Q
    |||||||||| || |||||||||| ||  ||||||| |||||||||||| ||| ||||||| || | |||| |||||||| ||||| |||||||    
T  13860140 aaaatagctaacactgaaatcgaacttgaaacatgaattatgactcctcatttacataccacttgagcttcaaatgaacatgtttacaaaattt 13860047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 34618918 - 34619059
Alignment:
Q  14 aaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtac 113  Q
    ||||| ||||||||||||||||| || |||||||| |||||||||||| ||| ||||||| || | |||||| |||||| ||||| ||||||| | ||||    
T  34618918 aaataactagcattgaaatcgaacttgcaacatgaattatgactcctcatttacataccacttgagcttcgagtgaacatgtttacaaaatttgatgtac 34619017  T
Q  114 gaaaaatattttcagagacaaaaatacgaggtctaatacgggg 156  Q
    | |||||||||||| ||||||||||| || | |||||||||||    
T  34619018 g-aaaatattttcaaagacaaaaatatgaagcctaatacgggg 34619059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 49089618 - 49089508
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| ||||||||||||||||||||| || || |||||| |  ||  ||||||| ||| |||| || || | |||||| |||||| ||||| |||||||     
T  49089618 ccaataaaatagctagcattgaaatcaaacttgcaacataaactacaactcctcatttacatatcacttgagcttcgagtgaacatgtttacaaaatttg 49089519  T
Q  108 acgtacgaaaa 118  Q
    |||||||||||    
T  49089518 acgtacgaaaa 49089508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 22130555 - 22130701
Alignment:
Q  16 atagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtacga 115  Q
    |||||||| |||||||||||| || ||||||||  ||||||||||||||| ||||||| || ||||||||||||||  ||||| ||||||||||||        
T  22130555 atagctagaattgaaatcgaacttgcaacatgaagtatgactcctcgtttacataccacttgaacttcgaatgaacgtgtttacaaaatttaacgt---- 22130650  T
Q  116 aaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaaaac 166  Q
    |||||||||||| || |||||||| |||| | ||||||  | |||||||||    
T  22130651 aaaatattttcaaagtcaaaaatatgaggccgaatacgaagcctaaaaaac 22130701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 40500551 - 40500405
Alignment:
Q  16 atagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtacga 115  Q
    |||||||| |||||||||||| || ||||||||  ||||||||||||||| ||||||| || ||||||||||||||  ||||| ||||||||||||        
T  40500551 atagctagaattgaaatcgaacttgcaacatgaagtatgactcctcgtttacataccacttgaacttcgaatgaacgtgtttacaaaatttaacgt---- 40500456  T
Q  116 aaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaaaac 166  Q
    |||||||||||| || |||||||| |||| | ||||||  | |||||||||    
T  40500455 aaaatattttcaaagtcaaaaatatgaggccgaatacgaagcctaaaaaac 40500405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 41397742 - 41397873
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaag-tttataaaattt 106  Q
    |||| |||||||||||||||||||||||| || |||||||| |||||||||||  ||| ||||| | || | |||||| |||||| | |||  |||||||    
T  41397742 ccaataaaatagctagcattgaaatcgaactttcaacatgaattatgactccttctttacatacgacttgagcttcgagtgaacatgttttgcaaaattt 41397841  T
Q  107 aacgtacgaaaaatattttcagagacaaaaata 139  Q
     ||||||| |||||||||||| |||||||||||    
T  41397842 gacgtacg-aaaatattttcaaagacaaaaata 41397873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 48572748 - 48572883
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| ||||||| ||||||| |||| ||| || ||||||||  || |||||||| ||| ||||||| || | |||||| ||||||  |||| |||||||     
T  48572748 ccaataaaatagttagcattaaaattgaacttgcaacatgaactacgactcctcatttacataccacttgagcttcgagtgaacacatttacaaaatttg 48572847  T
Q  108 acgtacgaaaaatattttc-agagacaaaaatacgag 143  Q
    |||||| |||||||||||| | |||||||||||||||    
T  48572848 acgtac-aaaaatattttccaaagacaaaaatacgag 48572883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 26199009 - 26198904
Alignment:
Q  38 ttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtacgaaaaatattttcagagacaaaaa 137  Q
    |||||||||||  |||||||| || |||||||||||| | |||||| | |||||| ||| |  |||||| |||||||  ||||||||||| ||| |||||    
T  26199009 ttacaacatgaagtatgactcttcatttgcataccatgtgaacttcaagtgaacatgttaacgaaatttgacgtacg-gaaatattttcaaagataaaaa 26198911  T
Q  138 tacgagg 144  Q
    || ||||    
T  26198910 tatgagg 26198904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 46135737 - 46135880
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| |||||| |||| |||||||||||| |||||||||||  |||||||| || ||||||||||| || |||||||| |||||  |||||  ||||||     
T  46135737 ccaataaaatacctagtattgaaatcgaacttacaacatgaactatgactcttcatttgcataccacttgaacttcgagtgaacgtgtttacgaaatttg 46135836  T
Q  108 acgtacgaaaaatattttcagagacaaaaatacgaggtctaatac 152  Q
    ||||||| |||||||||||| ||| ||||||| |||| |||||||    
T  46135837 acgtacg-aaaatattttcaaagataaaaatatgaggcctaatac 46135880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 4033151 - 4033291
Alignment:
Q  14 aaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgtac 113  Q
    |||||||| |||||||||| ||| || ||||||||  || |||||||||||| ||||||| |||| ||| ||||||||| ||||| ||||||| |||| |    
T  4033151 aaatagctggcattgaaatagaacttgcaacatgacctacgactcctcgtttacataccacttaagctttgaatgaacatgtttacaaaatttgacgtgc 4033250  T
Q  114 gaaaaatatttt-cagagacaaaaatacgaggtctaatacgg 154  Q
    | |||||||||| || ||||||||||| |||| |||||||||    
T  4033251 g-aaaatattttccaaagacaaaaatatgaggcctaatacgg 4033291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 3447267 - 3447393
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| |||||||||| ||||||||||||| || ||||||||  || ||||| || ||| ||||||| || | ||| || |||||| |||||||||||||     
T  3447267 ccaataaaatagctatcattgaaatcgaacttgcaacatgaactaagactcttcatttacataccacttgagctttgagtgaacatgtttataaaatttg 3447366  T
Q  108 acgtacgaaaaatattttcagagacaaa 135  Q
    |||||| ||||||||||| | |||||||    
T  3447367 acgtac-aaaaatatttttaaagacaaa 3447393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 3449028 - 3449180
Alignment:
Q  13 aaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaatttaacgta 112  Q
    ||||||| ||||||||| |||||| || ||||||||  |||||||| || ||| ||||||| || | ||| || ||||||  |||  |||||||||||||    
T  3449028 aaaatagttagcattgagatcgaacttgcaacatgaactatgactcttcatttacataccacttgagctttgagtgaacatatttgcaaaatttaacgta 3449127  T
Q  113 cgaaaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaaaac 166  Q
    || |||||||||||| | | ||||||| |||  ||||||||||  |||||||||    
T  3449128 cg-aaaatattttcaaacataaaaatatgagacctaatacgggacctaaaaaac 3449180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 12181520 - 12181584
Alignment:
Q  101 aaatttaacgtacgaaaaatattttcagagacaaaaatacgaggtctaatacggggtctaaaaaac 166  Q
    ||||| |||||||||||| |||||||| |||||||||||||||| |||||||| |  |||||||||    
T  12181520 aaattgaacgtacgaaaa-tattttcaaagacaaaaatacgaggcctaatacgagacctaaaaaac 12181584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 11671013 - 11671123
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| ||||||| |||||||||||||||| || | ||||||   |||||||||| ||| ||||||| || | |||||  |||| | ||| | |||||||     
T  11671013 ccaataaaatagttagcattgaaatcgaacttgctacatgaaccatgactcctcatttacataccacttgagcttcgggtgaatatgttaacaaaatttg 11671112  T
Q  108 acgtacgaaaa 118  Q
    |||||||||||    
T  11671113 acgtacgaaaa 11671123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 7305557 - 7305634
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcga 85  Q
    |||| |||||| |||||||||||||| || |||||||||||  |||||||| || |||| |||||| |||||||||||    
T  7305557 ccaataaaatatctagcattgaaatcaaacttacaacatgaactatgactcttcatttgtataccacttaaacttcga 7305634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 14389769 - 14389692
Alignment:
Q  78 aacttcgaatgaacaagtttataaaatttaacgtacgaaaaatattttcagagacaaaaatacgaggtctaatacgggg 156  Q
    ||||| || ||||||  |||||||||||| ||||||||||| |||||||| ||| ||||||| |||| |||||||||||    
T  14389769 aactttgagtgaacatatttataaaatttgacgtacgaaaa-tattttcaaagataaaaatatgaggcctaatacgggg 14389692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 1520460 - 1520578
Alignment:
Q  8 ccaagaaaatagctagcattgaaatcgaatttacaacatgagttatgactcctcgtttgcataccatttaaacttcgaatgaacaagtttataaaattta 107  Q
    |||| |||||| ||| |||| |||||||| ||| ||||| |  ||| |||| |  ||||||||||| ||||||||||| |||||| ||||   ||||||     
T  1520460 ccaataaaatacctaacattaaaatcgaacttataacataaactataactctttatttgcataccacttaaacttcgagtgaacatgttttcgaaatttg 1520559  T
Q  108 acgtacgaaaaatattttca 127  Q
    |||||| |||||||||||||    
T  1520560 acgtac-aaaaatattttca 1520578  T

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