View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13729_low_1 (Length: 564)
Name: NF13729_low_1
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 253 - 545
Target Start/End: Original strand, 1855362 - 1855654
Alignment:
| Q |
253 |
ccgaaaaagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatct |
352 |
Q |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttccctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagtttcggatatct |
1855461 |
T |
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| Q |
353 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855462 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
1855561 |
T |
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| Q |
453 |
acaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatg |
545 |
Q |
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| T |
1855562 |
acaggtttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatacaagcatttaaattctcaccttctacactatctatg |
1855654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 1855133 - 1855333
Alignment:
| Q |
18 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1855133 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatgttacataaattccaaatttatgctcacttgta |
1855232 |
T |
|
| Q |
118 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacgtctctgtac |
217 |
Q |
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| T |
1855233 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacatctctgtac |
1855332 |
T |
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| Q |
218 |
g |
218 |
Q |
| |
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| |
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| T |
1855333 |
g |
1855333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 259 - 543
Target Start/End: Complemental strand, 1817823 - 1817539
Alignment:
| Q |
259 |
aagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacag |
358 |
Q |
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||||||||| | ||| ||||| ||||||| ||| | |||||||||| || || |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
1817823 |
aagcaaatagagcttatctcatagtttctcctcacacaatttcaagtacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacag |
1817724 |
T |
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| Q |
359 |
taatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggt |
458 |
Q |
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|||||||| |||| ||||||||| ||||| |||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
1817723 |
taatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgattttaaacctaaaatagtaattgggaataacactggaaaatgcacaggt |
1817624 |
T |
|
| Q |
459 |
ttaggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatcta |
543 |
Q |
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||||| ||||| |||| ||||||||| | ||||||||||||||| || ||||||||||||||| || ||||||| ||||||| |
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| T |
1817623 |
ttagggtgttgccaagtggatattccttctagtatgaaaaatatcacaattgaagcatttaaattcccaacttctaccctatcta |
1817539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 1844992 - 1844913
Alignment:
| Q |
12 |
tatacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacat |
91 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1844992 |
tatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccattttacat |
1844913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 1818039 - 1817866
Alignment:
| Q |
34 |
ttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgtacagacaattccaaatt |
133 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||| |||| ||| | |||| || ||||| |
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| T |
1818039 |
ttccatatccatttggcataggaaattcaacagcacaacatcatacaccatgttacatggattcaaaatttgaactcacctgtgtaaacaactcaaaatt |
1817940 |
T |
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| Q |
134 |
aatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcac |
207 |
Q |
| |
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| T |
1817939 |
aattcggcctaggggtatcgaagtcctggacataaatccccaaggtcaagtggaaatgaaattttcagtctcac |
1817866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 9220619 - 9220511
Alignment:
| Q |
300 |
tcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaa |
399 |
Q |
| |
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|||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||| || ||| | | || ||||| || || |||||||||| |
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| T |
9220619 |
tcaagcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaa |
9220520 |
T |
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| Q |
400 |
gatgttatg |
408 |
Q |
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||||||||| |
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| T |
9220519 |
gatgttatg |
9220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
312 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
359 |
Q |
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||||| ||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 275 - 545
Target Start/End: Original strand, 37566852 - 37567135
Alignment:
| Q |
275 |
tctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgcc |
374 |
Q |
| |
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|||||||||| |||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37566852 |
tctcagagttccttctctcacaatttcaagcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgcc |
37566951 |
T |
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| Q |
375 |
acttattctacaggatgc-------ttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcac------aggttta |
461 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
37566952 |
acttattctacaggatgcttaacagttaacaagatgttatgattttgatcctaaaatggtaactgggaataacactggaaaatgcacaggcctaggttta |
37567051 |
T |
|
| Q |
462 |
ggttgttgtgaagttgatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatg |
545 |
Q |
| |
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|| ||||| |||| ||||||||| | ||||||||||||||| || ||| ||||||||||| || |||||||||| |||||| |
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| T |
37567052 |
gggtgttgccaagtggatattccttctagtatgaaaaatatcacaattgaaacatttaaattcccaacttctacactgtctatg |
37567135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
102 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
201 |
Q |
| |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
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| Q |
202 |
tc |
203 |
Q |
| |
|
|| |
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|
| T |
37566844 |
tc |
37566845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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