View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13729_low_13 (Length: 243)
Name: NF13729_low_13
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11402669 - 11402895
Alignment:
| Q |
1 |
aagactcatcagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11402669 |
aagactcattagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaa |
11402768 |
T |
|
| Q |
101 |
ctgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcctcttgaaattattgtctctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11402769 |
ctgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcctcttgaaattattgtctctc |
11402868 |
T |
|
| Q |
201 |
cattgatcgaagtttccacatcctctt |
227 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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|
| T |
11402869 |
cattgatcgaagtttccacgtcctctt |
11402895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 29304271 - 29304106
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
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| T |
29304271 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
29304172 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
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|
| T |
29304171 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
29304106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 12528771 - 12528936
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
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|
| T |
12528771 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
12528870 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
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|
| T |
12528871 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
12528936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 35842251 - 35842086
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
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|
| T |
35842251 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
35842152 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
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|
| T |
35842151 |
tcttggttgtaacaacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
35842086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 12643962 - 12643795
Alignment:
| Q |
15 |
ttttgatatgaattttctgccacgtttgcctgatgtt-gtatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtc |
113 |
Q |
| |
|
||||||||||||||||||| || |||| | |||||| |||| ||||||| |||| |||||||| ||| ||| | ||| |||||||| ||||||| || |
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|
| T |
12643962 |
ttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaacttttcatagtggaaacaactataatttgttc |
12643863 |
T |
|
| Q |
114 |
tctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||||| |||||| | ||| || || || || | |||||| ||| |||||||| ||||||||||||| |
|
|
| T |
12643862 |
tctcttggttgtaatatccttttcctttgtcatgattggtataactaaaattgtctccacctcttcct |
12643795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 27729984 - 27730149
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
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|
| T |
27729984 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
27730083 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
27730084 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
27730149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 24147261 - 24147096
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgtt-gtatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||| |||| | ||||| ||| |||||||||| | |||| || | ||| |||| | |||| ||| |
|
|
| T |
24147261 |
ttgatatgaattctctgccatgtttgccttatgtttgtatctacaatcagcttctttgtgcctgtactttccacaattaaagcaaccattatttttcctc |
24147162 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
24147161 |
tcttggttgtaataacctcttcctctgccacggttgttggagccaaaattgtttccacctcttcct |
24147096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 45966538 - 45966373
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
|
|
| T |
45966538 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
45966439 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
45966438 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaagttgtttccaccttttcct |
45966373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 42912884 - 42913049
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
|
|
| T |
42912884 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
42912983 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
42912984 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
42913049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 42301034 - 42300959
Alignment:
| Q |
106 |
atttggtctctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| ||||||||| |||||| |||||||| ||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
42301034 |
atttgttctctcttggttgtaataacctcttcctctgccacggctattggaaccaaaattgtttccacctcttcct |
42300959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 29282025 - 29282190
Alignment:
| Q |
17 |
ttgatatgaattttctgccacgtttgcctgatgttg-tatttgcaatcggctgctttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctc |
115 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||| | | |||| || | |||||||| | ||||| |||| |
|
|
| T |
29282025 |
ttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctc |
29282124 |
T |
|
| Q |
116 |
tcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct |
181 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
29282125 |
tcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct |
29282190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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