View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13729_low_14 (Length: 237)
Name: NF13729_low_14
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50912376 - 50912597
Alignment:
| Q |
1 |
tgataatgtaacatgatgtttgttggtgaatgtcagccatacacctaacacattatttatgaactgtgcatatttatttttcttgacttggttgttgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50912376 |
tgataatgtaacatgatgtttgttgatgaatgtcagccatacacctaacacattatttatgaactgtgcatatttatttttcttgacttagttgttgaag |
50912475 |
T |
|
| Q |
101 |
agtatagttggagacaatcaagctaaggttcacaagagatcacataatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50912476 |
agtatagttggagacaatcaagctaaggttcacaagagatcacatgatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagaga |
50912575 |
T |
|
| Q |
201 |
gcaattaaatatatgtcccact |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50912576 |
gcaattaaatatatgtcccact |
50912597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 38029425 - 38029600
Alignment:
| Q |
49 |
cacattatttatgaactgtgcatatttatttttcttgacttggttgttgaagagtatag-ttggagacaat---caagctaaggttcacaagagatcaca |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||| || ||| |||||| || || ||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
38029425 |
cacattatttatcaactgtgcatatttactgttcttgatttagtttttgaag-gtccaggttggagacaatagacaagatatggttcacaagagatcaca |
38029523 |
T |
|
| Q |
145 |
taatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagagagcaattaaatatatgtcccac |
221 |
Q |
| |
|
| ||| | || |||||| ||| ||||||||||||| || |||||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
38029524 |
tgatactctcaagaggtctttttcaaagattgaatgattgcttaagacttgagacaataattaaatatatgtcccac |
38029600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 38025509 - 38025686
Alignment:
| Q |
47 |
aacacattatttatgaactgtgcatatttatttttcttgacttggttgttgaagagtatagttggagacaat---caagc----taaggttcacaagaga |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||| || ||| |||||| | |||||||||||| ||||| || ||||||||||||| |
|
|
| T |
38025509 |
aacacattatttatcaactgtgcatatttactgttcttgatttagtttttgaagggccaggttggagacaatagacaagcagactatggttcacaagaga |
38025608 |
T |
|
| Q |
140 |
tcacataatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagagagcaattaaatatatgtc |
217 |
Q |
| |
|
| ||| ||| |||| |||||| ||||||||||||||||| |||||| || |||| ||| | ||||||||||||||| |
|
|
| T |
38025609 |
ttccatgatactgtcaagaggtctttctcaaagattgaatgatcgctcaagacttgagacaataattaaatatatgtc |
38025686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 55084211 - 55084144
Alignment:
| Q |
122 |
gctaaggttcacaagagatcacataatattgtctagaggtatttctcaaagattgaattatcgcttaa |
189 |
Q |
| |
|
|||| ||||||||||||||||||| | | ||||||||||| ||||| |||||||||| || |||||| |
|
|
| T |
55084211 |
gctatggttcacaagagatcacatgaaactgtctagaggtctttctttaagattgaatgattgcttaa |
55084144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 38037525 - 38037612
Alignment:
| Q |
128 |
gttcacaagagatcacataatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagagagcaattaaatatatgt |
216 |
Q |
| |
|
|||||| ||||||||||| || | || |||||| ||||||||||||||||| || |||| | |||| |||||| |||||||| ||||| |
|
|
| T |
38037525 |
gttcaccagagatcacatgatgctctcaagaggtctttctcaaagattgaatgattgcttga-acttgagagagtaattaaatgtatgt |
38037612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 21605416 - 21605591
Alignment:
| Q |
49 |
cacattatttatgaactgtgcatatttatttttcttgacttggttgttgaagagtatagttggagacaat---caagctaaggttcacaagagatcacat |
145 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||| || ||| |||||| | |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
21605416 |
cacattatttatcaactgtgcatatttgctgttcttgatttagtttttgaagggccaggttggagacaatagacaagctatggttcacaagagatcacat |
21605515 |
T |
|
| Q |
146 |
aatattgtctagaggtatttctcaaagattgaattatcgcttaacacttcagagagcaattaaatatatgtcccac |
221 |
Q |
| |
|
||| | || |||||| ||||||||||||| ||| || |||||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
21605516 |
gatactctcaagaggtctttctcaaagattcaatgattgcttaagacttgagacaataattaaatatatgtcccac |
21605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University