View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13729_low_2 (Length: 403)
Name: NF13729_low_2
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 17393 - 17627
Alignment:
| Q |
10 |
atatctgagtaaatactcttaacttataaatgattctcactttctaaaattatttttctgaatgtatgttgaaattgatgatagaattgacataattatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17393 |
atatctgagtaaatactcttaacttataaatgattctcactttctaaaattatttttctcaatgtatgttgaaattgatgatagaattgacataattatg |
17492 |
T |
|
| Q |
110 |
gtgatttttccaaatgaactacctattcatttcaacatacacttaataaaaagataaagtcttcttattttaaatatgcaatttacattttaatgatggg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17493 |
gtgatttttccaaatgaactacctattcatttcaacatacacttaataaaaagataaagtcttcttatcttaaatatgcaatttacattttaatgatggg |
17592 |
T |
|
| Q |
210 |
aaatatgcaatttaaatggataactaaggatgaact |
245 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
17593 |
aaatatgcaatttaaatggat-actaaggatgaact |
17627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 248 - 387
Target Start/End: Original strand, 18368 - 18507
Alignment:
| Q |
248 |
ggacaatctttgtgatttaaagtaactcgccaaaaggtgaagtttgaaaagggatcaaaaaataagaggaaaacaaagagaaggaaatatgcaagatgac |
347 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18368 |
ggacaatctgtgtgatttaaagtaactcgccaaaaggtgaagtttgaaaagggttcaaaaaataagaggaaaacaaagagaaggaaatatgcaagatgac |
18467 |
T |
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| Q |
348 |
tagggatttattgactagccggtattagtcatgttatggt |
387 |
Q |
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| T |
18468 |
tagggatttattgactagccggtattagtcatgttatggt |
18507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 26256 - 26152
Alignment:
| Q |
93 |
gaattgacataattatggtgatttttccaaatgaactacctattcatttcaacatacacttaataaaaag-ataaagtcttcttattttaaatatgcaat |
191 |
Q |
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||||||| ||||||||||||||||| ||||| |||| | |||||||| ||||||||||||| ||||||| ||||||| || | |||||||||||||| |
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| T |
26256 |
gaattgatataattatggtgattttaccaaactaactccttattcattccaacatacacttagtaaaaagaataaagtgtt-gaaatttaaatatgcaat |
26158 |
T |
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| Q |
192 |
ttacat |
197 |
Q |
| |
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|||||| |
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|
| T |
26157 |
ttacat |
26152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 25325 - 25289
Alignment:
| Q |
300 |
gatcaaaaaataagaggaaaacaaagagaaggaaata |
336 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| |
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|
| T |
25325 |
gatcaaaaaataagaggaataccaagagaaggaaata |
25289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 20323856 - 20324031
Alignment:
| Q |
19 |
taaatactcttaacttataaatgattctcactttctaaaattatttttctgaatgtatgttgaaattgatgatagaattgacataattatggtgattttt |
118 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
20323856 |
taaatactcttaacttataa----tactcactttctaaaattatttttcttaatgcatgtttgaattgatgatagaattgacataattatggcgatttta |
20323951 |
T |
|
| Q |
119 |
ccaaatgaactacctattcatttcaacatacacttaataaaaaga-taaagtcttcttattttaaatatgcaatttacat |
197 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |
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|
| T |
20323952 |
ccaaattcactccctattcatttcaacatacacttagtaaaaatattaaagtgttgaaattttaaatatgcaatttacat |
20324031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 20299006 - 20299182
Alignment:
| Q |
18 |
gtaaatactcttaacttataaatgattctcactttctaaaattatttttctgaatgtatgttgaaattgatgatagaattgacataattatggtgatttt |
117 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20299006 |
gtaaatactcttaacttataa----tactcactttctaaaattatttttcttaatgcatgtttgaattgatgatagaattgacataattatggtgatttt |
20299101 |
T |
|
| Q |
118 |
tccaaatgaactacctattcatttcaacatacacttaataaaaaga-taaagtcttcttattttaaatatgcaatttacat |
197 |
Q |
| |
|
|||||| ||| |||||||||| ||||| ||||||| |||| | | |||||| || ||||||||||||||||||||||| |
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| T |
20299102 |
accaaattcactccctattcattccaacacacacttagtaaatatattaaagtgttgatattttaaatatgcaatttacat |
20299182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 20325862 - 20325693
Alignment:
| Q |
19 |
taaatactcttaacttataaatgattctcactttctaaaattatttttctgaatgtatgttgaaattgatgatagaattgacataattatggtgattttt |
118 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20325862 |
taaatactcttaacttataa----tactcattttctaaaattatttttcttaatgtatgtttgaattgatgatagaattgacataattatggtgatttca |
20325767 |
T |
|
| Q |
119 |
ccaaatgaactacctattcatttcaacatacacttaataaaaaga-taaagtcttcttattttaaatatgcaat |
191 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| |||||||| |||||| || |||||||||||||||| |
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| T |
20325766 |
ccaaactcactccctattcattccaacatacacttggtaaaaagattaaagtattgaaattttaaatatgcaat |
20325693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 20301326 - 20301151
Alignment:
| Q |
19 |
taaatactcttaacttataaatgattctcactttctaaaattatttttctgaatgtatgttgaaattgatgatagaattgacataattatggtgattttt |
118 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20301326 |
taaatactcttaacttataa----tactcattttctaaaattatttttcttaatgcatgtttgaattgatgatagaattgacataattatggtgatttca |
20301231 |
T |
|
| Q |
119 |
ccaaatgaactacctattcatttcaacatacacttaat-aaaaaga-taaagtcttcttattttaaatatgcaatttaca |
196 |
Q |
| |
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||||| ||| |||||||||| |||||||||||| | ||||||| |||||| || |||||||||||||||| |||| |
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| T |
20301230 |
ccaaactcacttcctattcattccaacatacacttggtaaaaaagattaaagtattgaaattttaaatatgcaatataca |
20301151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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