View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13729_low_3 (Length: 374)
Name: NF13729_low_3
Description: NF13729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13729_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 42911107 - 42910748
Alignment:
| Q |
1 |
atgcaaaccttcaattatttgatttgtctaattttannnnnnn-gctaattaaacatccaaaaacctagctatttcctcaattagacattttgagtataa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911107 |
atgcaaaccttcaattatttgatttgtctaattttattttttttgctaattaaacatccaaaaacctagctatttcctcaattagacattttgagtataa |
42911008 |
T |
|
| Q |
100 |
tagtttattgaacatgacttaaaatgggtgaatgtttgatcaaaaatttgatcctaagactcccttacatgtaaggtttaatgctatatttagattattt |
199 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42911007 |
taatttattgaatatgacttaaaatgggtgaatgtttgatcaaaaatttgatcctaagactcccttacatgtaaggtttaatgctatatttggattattt |
42910908 |
T |
|
| Q |
200 |
tgtttgtgaaattgtgttgttaatgatgaattgtaggtgactagtggaaaattgttgaagacttggacagctcattataaatctatagaccacataatat |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42910907 |
tgtttgtgaaattgtgttgtttatgatgaattgtaggtgactagtggaaaattgttgaagacttggacagctcattataaatctgtagaccacataatat |
42910808 |
T |
|
| Q |
300 |
tttctaatgatgattctcttcttatttctgggtcaattgatggtatgatatgtgtttggt |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910807 |
tttctaatgatgattctcttcttatttctgggtcaattgatggtatgatatgtgtttggt |
42910748 |
T |
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