View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_high_1 (Length: 714)
Name: NF1372_high_1
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_high_1 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 231 - 707
Target Start/End: Complemental strand, 42519560 - 42519084
Alignment:
| Q |
231 |
aacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtg |
330 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42519560 |
aacacaatggctggaggttacatagcacaaggctctggaaaagaatatccaggaaaattcaccattagggtgttcatcatttgcatgactgcagcatgtg |
42519461 |
T |
|
| Q |
331 |
gaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtctcaag |
430 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42519460 |
gaggcttaatctttggttatgatcttggcatttcaggtacaatattctaatttattttcttcttttttccatttaagtgtttgacaaaatatgtctcaag |
42519361 |
T |
|
| Q |
431 |
aattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519360 |
aattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttc |
42519261 |
T |
|
| Q |
531 |
cagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtattt |
630 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519260 |
cagatgtttatgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtattt |
42519161 |
T |
|
| Q |
631 |
ggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctgtggtg |
707 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42519160 |
ggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctggtg |
42519084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 226 - 707
Target Start/End: Complemental strand, 1241333 - 1240863
Alignment:
| Q |
226 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
325 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
1241333 |
gaaagaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
1241234 |
T |
|
| Q |
326 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtc |
425 |
Q |
| |
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|| || |||||||||||| || |||||||||||| |||||||||||||||||| | ||| ||||||||||| |||| |||||| |
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| T |
1241233 |
atttgaaggcttaatcttcggctatgatcttggcctttcaggtacaatattctcatttt--------------ccaattaagtgtttgccaaa-tatgtc |
1241149 |
T |
|
| Q |
426 |
tcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatccat----tcttaatga |
521 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
1241148 |
tcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccatccattcttgctga |
1241049 |
T |
|
| Q |
522 |
agttctttccagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctc |
621 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1241048 |
agttctttccagatgtttaggctaaggagctaaacattaagcctaccgataatcaatactgcaaattcgacagtcagacactaacgttgtttacatcctc |
1240949 |
T |
|
| Q |
622 |
tttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctgtggtg |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
1240948 |
tttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatctttggaagacatcttaccatgctctctggtg |
1240863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 42519763 - 42519628
Alignment:
| Q |
29 |
agaatatatgttattattttaaacttttgatcgaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgtt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519763 |
agaatatatgttattattttaaacttttgatagaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgtt |
42519664 |
T |
|
| Q |
129 |
tatataataaaaatacctgacagcatatatctaaac |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42519663 |
tatataataaaaatacctgacagcatatatctaaac |
42519628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 1241567 - 1241520
Alignment:
| Q |
39 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1241567 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
1241520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 697
Target Start/End: Original strand, 42550903 - 42550991
Alignment:
| Q |
609 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatg |
697 |
Q |
| |
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||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| |||||| || |||||||| ||||| |||||| |
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| T |
42550903 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatg |
42550991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 226 - 707
Target Start/End: Complemental strand, 41972962 - 41972496
Alignment:
| Q |
226 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
325 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
41972962 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
41972863 |
T |
|
| Q |
326 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtc |
425 |
Q |
| |
|
|| ||||||||||||||| || ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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|
| T |
41972862 |
atttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctcatttt--------------ccattgaagtgtttgacaaaatatgtc |
41972777 |
T |
|
| Q |
426 |
tcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagtt |
525 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41972776 |
tcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatccattcttgctgaagtt |
41972677 |
T |
|
| Q |
526 |
ctttccagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttg |
625 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
41972676 |
ctttccagatgtttaggctaaggagctaaacattaagcctacggataatcaatactgcaaattcgacagtcagacact-acgttgtttacatcctctttg |
41972578 |
T |
|
| Q |
626 |
tatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctgtggtg |
707 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41972577 |
tatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctggtg |
41972496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 226 - 509
Target Start/End: Complemental strand, 270 - 1
Alignment:
| Q |
226 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
325 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |||||| |
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|
| T |
270 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
171 |
T |
|
| Q |
326 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtc |
425 |
Q |
| |
|
|| ||||||||||||||| || ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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|
| T |
170 |
atttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctca--------------ttttccattgaagtgtttgacaaaatatgtc |
85 |
T |
|
| Q |
426 |
tcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatc |
509 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
84 |
tcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatc |
1 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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