View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_high_11 (Length: 385)
Name: NF1372_high_11
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 353158 - 353505
Alignment:
| Q |
10 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
109 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
353158 |
gcaaaggcagagaaatttgatgaagctttacaagttgtcgaaagaatgaatgctgttgggtgtagacctgatacactttttttcaattcgttcatttata |
353257 |
T |
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| Q |
110 |
cgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaat |
209 |
Q |
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| T |
353258 |
cgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaat |
353357 |
T |
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| Q |
210 |
gatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
353358 |
gatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacttat |
353457 |
T |
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| Q |
310 |
tatcacccattgatcaagtcatgctttaaaatgagaaaagtagatact |
357 |
Q |
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| T |
353458 |
tatcacccattgatcaagtcatgctttaaaatgagaaaagtagatact |
353505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 10579938 - 10580282
Alignment:
| Q |
10 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
109 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||| |
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| T |
10579938 |
gcaaaagcagagaaatttgacgaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacgctctttttcaattcgttcatttata |
10580037 |
T |
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| Q |
110 |
cgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaat |
209 |
Q |
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|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10580038 |
cgttggggagagcaggcagaatagatgatgctacatatgtattcaaggttgcgatgccgaaggccaatgtggccccaaatacatcgacctataactcaat |
10580137 |
T |
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| Q |
210 |
gatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatat |
309 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
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| T |
10580138 |
ggtttctatgttttgttactatgcacgtgaagagagagcttttggaatactgaaggagatggaaaaatcaggtctttgtaagccggatattcagac---t |
10580234 |
T |
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| Q |
310 |
tatcacccattgatcaagtcatgctttaaaatgagaaaagtagatact |
357 |
Q |
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| T |
10580235 |
tttcacccattgatcaagtcatgctttaaaatgagagaaatagatact |
10580282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 24578345 - 24578689
Alignment:
| Q |
10 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
109 |
Q |
| |
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||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||| |
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| T |
24578345 |
gcaaaagcagaaaaatttgaagaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacactctttttcaattcgctcatttata |
24578444 |
T |
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| Q |
110 |
cgatggggagagcaggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaat |
209 |
Q |
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| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24578445 |
cattggggagagcaggcagaatagatgatgctacacatgtattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaat |
24578544 |
T |
|
| Q |
210 |
gatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatat |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
24578545 |
gatttctatgttttgttactatgcacaagaagagagagcttttggcatactgaaggagatggaaaaatcaggtctttgtaagcctgatattcagac---t |
24578641 |
T |
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| Q |
310 |
tatcacccattgatcaagtcatgctttaaaatgagaaaagtagatact |
357 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
24578642 |
tatcacccattgatcaagtcatgctttaaaatgagggaaatagatact |
24578689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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