View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_high_12 (Length: 360)
Name: NF1372_high_12
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 49903983 - 49904334
Alignment:
| Q |
1 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49903983 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
49904082 |
T |
|
| Q |
101 |
cacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccacggtttctccgatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49904083 |
cacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccacggtttctccgatca |
49904182 |
T |
|
| Q |
201 |
ccagatacaaaccatcattcgcaagattccattgctcatcgtttacaaccccattaaaaccattttgccaaagtttcaatttttagcctccaaaggtgct |
300 |
Q |
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| T |
49904183 |
ccagatacaaaccatcattcgcaagattccattgctcatcgtttacaaccccattaaaaccattttgccaaagtttcaatttttagcctccaaaggtgct |
49904282 |
T |
|
| Q |
301 |
tctcccaaagacattgttgccaccgttaccagaagccccaatttcctttgtt |
352 |
Q |
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| T |
49904283 |
tctcccaaagacattgttgccaccgttaccagaagccccaatttcctttgtt |
49904334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 43 - 305
Target Start/End: Complemental strand, 49563405 - 49563143
Alignment:
| Q |
43 |
gattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttcaaca |
142 |
Q |
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| T |
49563405 |
gattcagatcaaccatctttcacagtttcctacctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgacttcgtttcaaca |
49563306 |
T |
|
| Q |
143 |
ctcccgacaaacccgattccgttatcgcctttttcaaaacccacggtttctccgatcaccagatacaaaccatcattcgcaagattccattgctcatcgt |
242 |
Q |
| |
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| || || ||||||||| | ||||| ||||||||||||||||| ||||||||| | | ||||||||| ||||||| |||| | ||| || | |||| |
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| T |
49563305 |
ccccggataaacccgatactgttattgcctttttcaaaacccatggtttctccattgatcagatacaatccatcatccgcagggatcccctggttttcgt |
49563206 |
T |
|
| Q |
243 |
ttacaaccccattaaaaccattttgccaaagtttcaatttttagcctccaaaggtgcttctcc |
305 |
Q |
| |
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| T |
49563205 |
ctcaaaccccatcaaatccattttgccaaagcttcaatttttagcttccaaaggcgtttctcc |
49563143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 49559126 - 49559025
Alignment:
| Q |
115 |
aaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttatcgcctttttcaaaacccacggtttctccgatcaccagatacaaacca |
214 |
Q |
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||||||||||||| ||||||||| ||||| || ||||| ||||||| |||||| |||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
49559126 |
aaagcatccaaacaacttcgtttaaacacccctcacaaagccgattcggttatctcctttttcaaaacccacgctttctccaatcatcagatacaaacca |
49559027 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
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|
| T |
49559026 |
tc |
49559025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 49559023 - 49558947
Alignment:
| Q |
262 |
attttgccaaagtttcaatttttagcctccaaaggtgcttctcccaaagacattgttgccaccgttaccagaagccc |
338 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||||| |
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| T |
49559023 |
attttgccaaagattcaatttttatactccaaaggtgcttctccccaagacattgttgccgccatcaccagaagccc |
49558947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 49553371 - 49553411
Alignment:
| Q |
263 |
ttttgccaaagtttcaatttttagcctccaaaggtgcttct |
303 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||| |
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| T |
49553371 |
ttttaccaaagtttcaatttttactctccaaaggtgcttct |
49553411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 41483739 - 41483645
Alignment:
| Q |
73 |
tacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttcaacactcccgacaaacccgattccgttat |
167 |
Q |
| |
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|||||||| |||| ||| | |||||| |||||||| ||||| |||||||||||| ||||| |||||||||| |||||||| ||||| || ||||| |
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| T |
41483739 |
tacctcactaacacttgtggtttatcaccacaagaagctcttaaagcatccaaatgacttggtttcaacacacccgacaatcccgactctgttat |
41483645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 14520119 - 14520157
Alignment:
| Q |
265 |
ttgccaaagtttcaatttttagcctccaaaggtgcttct |
303 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
14520119 |
ttgccaaagtttcaatttttactctccaaaggtgcttct |
14520157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 14476197 - 14476157
Alignment:
| Q |
263 |
ttttgccaaagtttcaatttttagcctccaaaggtgcttct |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
14476197 |
ttttgccaaagtttcaattttttctctccaaaggtgcttct |
14476157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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