View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1372_high_14 (Length: 355)
Name: NF1372_high_14
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 154 - 327
Target Start/End: Original strand, 48201761 - 48201937
Alignment:
| Q |
154 |
accttcttcaaacaaactctaaactctactgatgtttttcatctccattattgtgattcttgtaat----tactactattagattagattccttaaatag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48201761 |
accttcttcaaacaaactctaaactctactgatgtttttcatctccattattgtgattcttgtaattacgtactactattagattagattccttaaatag |
48201860 |
T |
|
| Q |
250 |
ttctctagaaaaacaaatatgaaatgtcactaccaaaataaatggccctttgaaatctatgatcatgtacactttatt |
327 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48201861 |
ttctctag-aaaacaaatatgaaatgtcactaccaaaataaatggccctttgaaatctatgatcatgtacactttatt |
48201937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 48201613 - 48201685
Alignment:
| Q |
5 |
tgtccaataatatgttttctaggaaaccttataaaaattatctaacaaaatttaagaataaattctttttatt |
77 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
48201613 |
tgtccaacaaaatgttttctaggaaaccttataaaaattgtctaacaaaatttaagaataaattatttttatt |
48201685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University