View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_high_16 (Length: 331)

Name: NF1372_high_16
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_high_16
NF1372_high_16
[»] chr1 (1 HSPs)
chr1 (15-302)||(43336096-43336391)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 43336391 - 43336096
Alignment:
Q  15 tatatgaacgaccctggttaggacaataaattgaatcttattaatgtgtttttacatgcttcac--------tcttgttcttctcatacttcatgtaaag 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||  | |    
T  43336391 tatatgaacgaccctagttaggacaataaattgaatcttattaatgtgtttttacatgcttcacatgttcactcttgttcttctcatacttcatggcatg 43336292  T
Q  107 gaaagttaatgttgatacgtgttttccaagttgagttagaaaatggttgcaaacgagtgattagtggcgtgttcagtcagactcagtccaagtccatgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43336291 gaaagttaatgttgatacgtgttttccaagttgagttagaaaatggttgcaaacgagtgattagtggcgtgttcagtcagactcagtccaagtccatgtc 43336192  T
Q  207 aagttcaacaattaagatttaagacacagacagctttttatgttgtttatgcaagtgtggagtgatgaacactcctaatacttttcttctttattt 302  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  43336191 aagttcaacaattaagatttaagacacagccagctttttatgttgtctgtgcaagtgtgaagtgatgaacactcctaatacttttcttctttattt 43336096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University