View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_high_18 (Length: 323)

Name: NF1372_high_18
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_high_18
NF1372_high_18
[»] chr8 (3 HSPs)
chr8 (76-318)||(25890957-25891199)
chr8 (76-128)||(18309115-18309167)
chr8 (204-276)||(37718866-37718938)
[»] chr7 (7 HSPs)
chr7 (76-267)||(17506963-17507154)
chr7 (76-267)||(17546060-17546251)
chr7 (98-318)||(15645130-15645350)
chr7 (263-320)||(17504562-17504619)
chr7 (263-320)||(17548595-17548652)
chr7 (204-279)||(551599-551674)
chr7 (195-277)||(45976461-45976543)
[»] chr6 (1 HSPs)
chr6 (98-279)||(7956698-7956879)
[»] chr3 (2 HSPs)
chr3 (117-318)||(14853834-14854035)
chr3 (228-280)||(18381101-18381153)
[»] chr1 (2 HSPs)
chr1 (76-172)||(39584909-39585005)
chr1 (200-279)||(9991071-9991150)
[»] chr5 (2 HSPs)
chr5 (111-161)||(32239704-32239754)
chr5 (116-161)||(17674020-17674065)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 25890957 - 25891199
Alignment:
Q  76 gcaccacagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcac 175  Q
    |||||| |||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  176 attaagaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgc 275  Q
     ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  276 caaactaggtcggcaacctgagtaacctgcggtacctcctgag 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgag 25891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  76 gcaccacagaccacatctccctaaagcaaggacacgagagaaacaaatgacta 128  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  204 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgcc 276  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||   ||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 76 - 267
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  76 gcaccacagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcac 175  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  176 attaagaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 267  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  76 gcaccacagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcac 175  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  176 attaagaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 267  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 98 - 318
Target Start/End: Original strand, 15645130 - 15645350
Alignment:
Q  98 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 197  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||||||||||    
T  15645130 aaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgcc 15645229  T
Q  198 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgag 297  Q
    |  |||||||||||||| |||  |||||||||||| ||||| ||||||| ||||||||||||  ||| ||| |||||||||| ||| ||   | ||||||    
T  15645230 aagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcctgag 15645329  T
Q  298 taacctgcggtacctcctgag 318  Q
    |||||||| ||||||| ||||    
T  15645330 taacctgcagtacctcgtgag 15645350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 17504619 - 17504562
Alignment:
Q  263 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagat 320  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagat 17504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 17548595 - 17548652
Alignment:
Q  263 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagat 320  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagat 17548652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  204 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 279  Q
    ||||| ||||| | ||||||||||| ||| ||||| ||||| ||||||||||||| | ||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 45976543 - 45976461
Alignment:
Q  195 gccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgcca 277  Q
    |||| ||||||||||||||| ||||||||||  ||||| ||||| ||||| || |||||||||| || |||||  ||||||||    
T  45976543 gccaaattagatttagtaggaaggcgatcacaaagcagccgccaagcaaaaatagacacctttaaaaaaacctatttatgcca 45976461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 7956879 - 7956698
Alignment:
Q  98 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 197  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||| ||||||    
T  7956879 aaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgcc 7956780  T
Q  198 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 279  Q
    |  |||||||||||||| ||||||||||||||||  ||||| ||||||| ||||||||||||  ||||||| ||||||||||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 14853834 - 14854035
Alignment:
Q  117 aacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgccatattagatttagtaggta 216  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||  |||| |   ||||||||  ||||||||||||||||  ||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  217 ggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctg 316  Q
    | |||||||||||||| ||||| ||||||| |||||||||||| |||||||| ||||||||||  |  ||| || |||||||||||||||||||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  317 ag 318  Q
    ||    
T  14854034 ag 14854035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 18381101 - 18381153
Alignment:
Q  228 agcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaac 280  Q
    |||| ||||||||||||||| || ||||||||  ||||||| |||||||||||    
T  18381101 agcattcgccacgcaaagatagaaacctttaggggaacctgcttatgccaaac 18381153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  76 gcaccacagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggt 172  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 9991071 - 9991150
Alignment:
Q  200 attagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 279  Q
    ||||||||||||||| ||| ||||||| ||||| ||||| ||||| || | |||||| ||  ||||||| ||||||||||    
T  9991071 attagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 32239704 - 32239754
Alignment:
Q  111 gagagaaacaaatgactagcatcctccacctggccacaccccgaaatacac 161  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacac 32239754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 17674020 - 17674065
Alignment:
Q  116 aaacaaatgactagcatcctccacctggccacaccccgaaatacac 161  Q
    ||||||||||| ||||||||||||||||||||| || |||| ||||    
T  17674020 aaacaaatgacgagcatcctccacctggccacaaccagaaacacac 17674065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University