View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_high_8 (Length: 401)
Name: NF1372_high_8
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_high_8 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 124307 - 123984
Alignment:
| Q |
21 |
tatccactattaagtactacattcttaatccattaataattcacctaataatggctgattccaattcaacttggcattgtatagataaatatgaactcgg |
120 |
Q |
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| T |
124307 |
tatccactattaagtactacattcttaatctattaataattcacctaataatggctgattccaattcaacttggcattgtatagataaatatgaactcgg |
124208 |
T |
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| Q |
121 |
agtctctaattcatggaatgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaacaagggtaattagtcattaatatattcaca |
220 |
Q |
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| T |
124207 |
agtctctaattcatggaatgctacaaagctatttatcaatcctgaaataccagaggtgcttcaattcaaacaagggtaattagtcattaatatattcaca |
124108 |
T |
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| Q |
221 |
ttcaagtatattaagcaaagtattgactttgatgatttggttttaggttgcctcttgatgacgcaggatcgtcacaaagtcagcaactaagtgttcaatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
124107 |
ttcaagtatattaagcaaagtattgactttgatgatttggttttaggttgcctcttgatgacacaggatcgtcacaaagtcagcaactaagtgttcaatc |
124008 |
T |
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| Q |
321 |
tcaaatgtttagcccatcttcatc |
344 |
Q |
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|||||||||||||||||||||||| |
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| T |
124007 |
tcaaatgtttagcccatcttcatc |
123984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 22079045 - 22078940
Alignment:
| Q |
95 |
cattgtatagataaatatgaactcggagtctctaattcatggaatgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaacaag |
194 |
Q |
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| T |
22079045 |
cattgtatagataaatatgaactcggggtctctaatgcatggaatgctaccaagctgtttatcaatcctgaattcctcgaggtccttgaattcaaacaag |
22078946 |
T |
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| Q |
195 |
ggtaat |
200 |
Q |
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|||||| |
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| T |
22078945 |
ggtaat |
22078940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 23698106 - 23698015
Alignment:
| Q |
99 |
gtatagataaatatgaactcggagtctctaattcatggaatgctacaaagctatttatcaatcctgaaataccagaggtccttcaattcaaa |
190 |
Q |
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| T |
23698106 |
gtatagataagtacgaactcagagtctctaatgcatggaatgctacaaagctatttatcaatcctgaaatccctgaggtccttcaattcaaa |
23698015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 23697928 - 23697848
Alignment:
| Q |
261 |
ttttaggttgcctcttgatgacgcaggatcgtcacaaagtcagcaactaagtgttcaatctcaaatgtttagcccatcttc |
341 |
Q |
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|||||| ||||||||||||||| || || |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23697928 |
ttttagtttgcctcttgatgacccaacattgtcacagagtcagcaactaagtgttcaatctcagatgtttatcccatcttc |
23697848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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