View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_low_10 (Length: 397)

Name: NF1372_low_10
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_low_10
NF1372_low_10
[»] chr8 (1 HSPs)
chr8 (6-306)||(27309476-27309775)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 27309476 - 27309775
Alignment:
Q  6 ctccaacaatattgcaatcaaaatacaaactaataagctatgtaacatagacaactgaagaaataatttcannnnnnnnnattaaagaatatacatttcc 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  27309476 ctccaacattattgcaatcaaaatacaaactaataagctatgtaacatagacaactgaagaaataatttc-tttttttttattaaagaatatacatttcc 27309574  T
Q  106 ttttcaatgttttggaccacattgtaatgccttgcacttgcaggcccagaaattgttatgtagaattcattcatatgtttgtttctttgcagtggccgac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27309575 ttttcaatgttttggaccacattgtaatgccttgcacttgcaggcacagaaattgttatgtggaattcattcatatgtttgtttctttgcagtggccgac 27309674  T
Q  206 aacaaaataataacattagttgatgttagtaatactacacaacttcttaattataatttattcatgtattttgtcattaattaatactatactaaagtat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27309675 aacaaaataataacattagttgatgttagtaatactacacaacttcttaattataatttattcatgtattttgtcattaattaatactatactagagtat 27309774  T

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