View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372_low_15 (Length: 356)

Name: NF1372_low_15
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372_low_15
NF1372_low_15
[»] chr5 (6 HSPs)
chr5 (30-347)||(38157179-38157496)
chr5 (31-172)||(29568242-29568385)
chr5 (31-172)||(29168339-29168482)
chr5 (31-132)||(27918776-27918877)
chr5 (31-172)||(1758232-1758375)
chr5 (31-172)||(29425380-29425523)
[»] chr4 (4 HSPs)
chr4 (31-168)||(18986188-18986327)
chr4 (31-172)||(27462084-27462227)
chr4 (31-172)||(27521208-27521351)
chr4 (31-172)||(27482223-27482366)
[»] chr3 (1 HSPs)
chr3 (31-172)||(25518568-25518711)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 347
Target Start/End: Complemental strand, 38157496 - 38157179
Alignment:
Q  30 tttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157496 tttctttaacctcagaaggatcaataacttcagatatacatctcctgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattg 38157397  T
Q  130 atccggccaggcatgggtcattgacacagcggcgaagagcattgccagttccgatgatcgacagaaccagtcgacgacccttatacatacttattgaata 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38157396 atccggccaggcatgggtcattgacacagcggcgaagagcattgccagttccgatgatcgacagaaccagtcgacgacccttatacatacttattcaata 38157297  T
Q  230 ataaacaaagttaataaagcgtaggaggatcgacagtgatgaaacacgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157296 ataaacaaagttaataaagcgtaggaggatcgacagtgatgaaacacgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgt 38157197  T
Q  330 tatttccacaattcatat 347  Q
    ||||||||||||||||||    
T  38157196 tatttccacaattcatat 38157179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 29568242 - 29568385
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||  |||||| |||||||||||||||    
T  29568242 ttctttaacctcagaaggatcaataacttcagatatacatctactgatcggaggcagaggctgcaaagcagttgacagcccttttaccggcatggattga 29568341  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||| ||  |||||| |||  ||||||||||| |||||||||    
T  29568342 tccggcaaggtgcatggatcagagacacagcggctaagagcatt 29568385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 29168482 - 29168339
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||||  |||||| |||||||||||||||    
T  29168482 ttctttaaccttagaaggatcaataacttcagatatacatctactgatcggaggcagaggctgcaaagcagttgacagcccttttaccggcatggattga 29168383  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||| ||  |||||| |||  |||||||| || |||||||||    
T  29168382 tccggcaaggtgcatggatcagagacacagcagctaagagcatt 29168339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 27918877 - 27918776
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||| |||| ||||||||||||||||| |||||||||    
T  27918877 ttctttaacctcagaaggatcaataacttcagatatacatctcctgatcggagggagaggcggcaaagcagtcgacgaccctttaaccggaatggattga 27918778  T
Q  131 tc 132  Q
    ||    
T  27918777 tc 27918776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 1758375 - 1758232
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||   |||||| ||||| |||||||||    
T  1758375 ttctttaacctcagaaggatcaataacttcagatatacatctcctgattggaggcagaggctgcaaagcagttgatagcccttttaccggaatggattga 1758276  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    || ||| ||  |||||| |||  ||||||||||| |||||||||    
T  1758275 tctggcgaggtgcatggatcagagacacagcggctaagagcatt 1758232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 29425523 - 29425380
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||| |||||| |||||||||||||||    
T  29425523 ttctttaaccttataaggatcaataacttcatatatacatctactgatcggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattga 29425424  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    | |||| ||  |||||| |||  ||||||||||| |||||||||    
T  29425423 ttcggcaaggtgcatggatcagagacacagcggctaagagcatt 29425380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 18986327 - 18986188
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||| |||||| |||||||||||||||    
T  18986327 ttctttaacatcagacggatcaataacttcagatatacatctcctgattggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattga 18986228  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagag 168  Q
    |||||| ||  |||||| |||  ||||||||||| |||||    
T  18986227 tccggcaaggtgcatggatcagagacacagcggctaagag 18986188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 27462227 - 27462084
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||| ||||| ||||||||| |||||| |||||||||||||||    
T  27462227 ttctttaacctcagtaggatcaataacttcagatatacatctgctgatcggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattga 27462128  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||  ||  |||||| |||  ||||||||||| |||||||||    
T  27462127 tccggaaaggtgcatggatcagagacacagcggctaagagcatt 27462084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 27521208 - 27521351
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||  ||||| ||||| ||||| ||||||||| |||||| |||||||||||||||    
T  27521208 ttctttaacctcaaaaggatcaataacttcagatatacatctgctgatcggaggctgaggctgcaaagcagttgacggcccttttaccggcatggattga 27521307  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||| ||  ||| || |||  ||||||||||| |||||||||    
T  27521308 tccggcaaggtgcaaggatcagagacacagcggctaagagcatt 27521351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 27482366 - 27482223
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||  ||||||||||| ||||| ||||||||| |||||| || ||||||||||||    
T  27482366 ttctttaacctcagtaggatcgataacttcagatatacatctgctgatcggaggcagaggctgcaaagcagttgacggcccttttactggcatggattga 27482267  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||  ||  |||||| |||  ||||||||||| |||||||||    
T  27482266 tccggaaaggtgcatggatcagagacacagcggctaagagcatt 27482223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 25518711 - 25518568
Alignment:
Q  31 ttctttaacctcagaaggatcaataacttcagatatacatctactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattga 130  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||  ||||||||||||||||| |||| |||||||||||||||||||| | ||||    
T  25518711 ttctttaacctccaaaggatcaataacttcagatatacatctcctgatcggaggcagaggcggcaaagcagtcgacgaccctttaaccggcatagcttga 25518612  T
Q  131 tccggccag--gcatgggtcattgacacagcggcgaagagcatt 172  Q
    |||||| ||  |||||| |||  |||||||| ||||||||||||    
T  25518611 tccggcaaggtgcatggatcagcgacacagcagcgaagagcatt 25518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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