View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_22 (Length: 326)
Name: NF1372_low_22
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42758791 - 42758478
Alignment:
| Q |
1 |
gagaaagatttttacaatgactcatggtaaagtaaaaatagcgcataagaaacttatcattgtcaaatttggttgtagataccgctggatcaatatcttt |
100 |
Q |
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| T |
42758791 |
gagaaagatttttacaatgactcatggtaaagtaaaaatagcgcataagaaacttatcattgtcaaatttggttgtagataccactggatcaatatcttt |
42758692 |
T |
|
| Q |
101 |
caaaactagctcaaacaaaacctacaaattcaggtcattctcccgtatgaatcatcatggaggtaacagaacggcttgaatcagatagagacggtctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42758691 |
caaaactagctcaaacaaaacctacaaattcaggtcattctcccgtatgaatcatcatggaggtaacagaacggcttgaatcagatagagacggtctgat |
42758592 |
T |
|
| Q |
201 |
ttgttgttgtgtgtactgttttttgcgtgtaatcaatttcactatgtaaagattgtgtgctnnnnnnntgtctttactagggaaagattataaacacact |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42758591 |
ttgttgttgtgtgtactgttttctgcgtgtaatcaatttcactatgtaaagattgtgtgctaaaaaaatgtctttactagggaaagattataaacacact |
42758492 |
T |
|
| Q |
301 |
tatttttatagaat |
314 |
Q |
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|||||||||||||| |
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| T |
42758491 |
tatttttatagaat |
42758478 |
T |
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