View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372_low_24 (Length: 322)
Name: NF1372_low_24
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 1459342 - 1459479
Alignment:
| Q |
103 |
gcgtagacattagaagtaaacctagtaaaaccatgaatctcatgaatctttgcaatacgattcttgtaattgtaaacatatatcttattatagaaatcta |
202 |
Q |
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| T |
1459342 |
gcgtagacattagaagtaaacctagtaaaaccatgaatctcaggaatctttgaaatacgattcttgtaattgtaaacatatatcttattatagaaatcta |
1459441 |
T |
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| Q |
203 |
ggaccacttggtcatcttcctcagaaatataaagcagt |
240 |
Q |
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| T |
1459442 |
ggaccacttggtcatcttcctcagaaatataaagcagt |
1459479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 1470754 - 1470839
Alignment:
| Q |
136 |
tgaatctcatgaatctttgcaatacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttc |
221 |
Q |
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| T |
1470754 |
tgaatcccaggaatctttacagtaccatccttgtaattgtaaacacatatcttattatagaattccaggaccacttggtcatcttc |
1470839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1453708 - 1453789
Alignment:
| Q |
158 |
tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag |
239 |
Q |
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| T |
1453708 |
tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag |
1453789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1465400 - 1465481
Alignment:
| Q |
158 |
tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag |
239 |
Q |
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| T |
1465400 |
tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag |
1465481 |
T |
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